View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_low_19 (Length: 307)
Name: NF13944_low_19
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 32206592 - 32206870
Alignment:
| Q |
16 |
cattttatatattcattattaatataacctgttagagcataggttcagaatgcttacttacctgttttatcataacgagtctctataatgcaactcttgt |
115 |
Q |
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| T |
32206592 |
cattttatatagtcattattaatataacctgttagagcataggttcagaatgcttacttacctgttttatcataacgagtctctataatgcaactcttgt |
32206691 |
T |
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| Q |
116 |
aaagtttcatgtatnnnnnnnttactgtaagcttgttagtaagatgaaagactacttgaatcgaatggcgtcatattcttctgttcatgtcaaatgnnnn |
215 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32206692 |
aaagtttcatgtataaaaaaattactgtaaggttgttagtaagatgaaagactacttgaatcgaatggcgtcatattcttctgttcatgtcaaatgtttt |
32206791 |
T |
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| Q |
216 |
nnnattggaaaactaaaatgtttgtttcaaaatttcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
294 |
Q |
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| T |
32206792 |
tttattggaaaactaaaatgtttgtttcaaaatttcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
32206870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 32156818 - 32156774
Alignment:
| Q |
250 |
tcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
294 |
Q |
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| T |
32156818 |
tcaacaggtgacactttcaggactattgaatgcagtagatggtct |
32156774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 32174594 - 32174550
Alignment:
| Q |
250 |
tcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
294 |
Q |
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| T |
32174594 |
tcaacaggtgacactttcaggactattgaatgcagtagatggtct |
32174550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 32110636 - 32110590
Alignment:
| Q |
248 |
tttcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
294 |
Q |
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| T |
32110636 |
tttcaacagatgacactttcaggactattgaatgcagtagatggtct |
32110590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 32118898 - 32118854
Alignment:
| Q |
250 |
tcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
294 |
Q |
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| T |
32118898 |
tcaacaggtgacactttcaggactattgaatgctgttgatggtct |
32118854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 32211899 - 32211945
Alignment:
| Q |
248 |
tttcaacaggtgacactttcaggactgttgaatgcagtagatggtct |
294 |
Q |
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|||| |||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
32211899 |
tttctacagatgacactttcgggactattgaatgcagtagatggtct |
32211945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 32182680 - 32182648
Alignment:
| Q |
250 |
tcaacaggtgacactttcaggactgttgaatgc |
282 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
32182680 |
tcaacaggtgacactttcaggactattgaatgc |
32182648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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