View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_low_2 (Length: 692)
Name: NF13944_low_2
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 10 - 673
Target Start/End: Original strand, 46155734 - 46156400
Alignment:
| Q |
10 |
ggacatcatcactaggagaaccaaggagcttcacaaatattggtacagcacctgcctcaattactaccttagtgttttcagatgttccagaagctatatt |
109 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46155734 |
ggacatcatcactaggagaagcaaggagcttcacaaatattggtacagcacctgcctcaattactaccttagtgttttcagatgttccagaagctatatt |
46155833 |
T |
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| Q |
110 |
tgtcaaagcccatgctgcctcaaactacaacatacagtaaacaaaatcagtgcaatgcacaaataaatataaatatttagtgcataaaataaaacaagga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46155834 |
tgtcaaagcccatgctgcctcaaactacaacatacagtaaacaaaatcagtgcaatgcacaaataaatataaatatttactgcataaaataaaacaagga |
46155933 |
T |
|
| Q |
210 |
agataataacctgcagctgtggaaaatcttccctcatcaagaactcaataaagcgaggaactacaccagcttgtataacctcctcaattggtgggctacg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46155934 |
agataataacctgcagctgtggaaaatcttccctcatcaagaactcaataaagcgaggaactacaccagcttgtataacctcctcaattggtgggctacg |
46156033 |
T |
|
| Q |
310 |
ttctggtaagatataaaagttgttaaccaaatgtcccttaacaaattgtatacat---nnnnnnnnntgaaaataaagttatgtagaacagtatctaacc |
406 |
Q |
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| T |
46156034 |
ttctggtaagatataaaagttgttaaccaaatgtcccttaacaaattgtatacataaaaaaaaaaaatgaaaataaagttatgtagaacagtatctaacc |
46156133 |
T |
|
| Q |
407 |
aattgaaagcaacttccgaaactgagttgttgcctcaaactgcatgttattatcatcagtccagattcctgtaaccaaggctggtaggtgttccaactgc |
506 |
Q |
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| T |
46156134 |
aattgaaagcaacttccgaaactgagttgttgcctcaaactgcatgttattatcatcagtccagattcctgtaaccaaggctggtaggtgttccaactgc |
46156233 |
T |
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| Q |
507 |
agaatgatagacatacacatcgaagaacaattcagtaaacttcagcatgcttaagttcattaaaacctaccataatattaatcaaaccttgtagctacat |
606 |
Q |
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| T |
46156234 |
agaatgatagacatacacatcgaagaacaattcggtaaacttcagcatgcttaagttcatcaaaacctaccataatatt-atcaaaccttgtagctacat |
46156332 |
T |
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| Q |
607 |
acagatgggaaagacacgttcacaagtc-agaacatataaccagtgaatatcatgaacatgtttatat |
673 |
Q |
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| T |
46156333 |
acagatgggaaagacacgttcacaagtcgggaacatataaccagtgaatatcatgaacatgtttatat |
46156400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 37311415 - 37311530
Alignment:
| Q |
26 |
agaaccaaggagcttcacaaatattggtacagcacctgcctcaattactaccttagtgttttcagatgttccagaagctatatttgtcaaagcccatgct |
125 |
Q |
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|||| |||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
37311415 |
agaagcaaggagcttcacaaaaattgggacagccccatggtcaattaccaccttagtgttttcagatgttccagaagctatgtttgtcaaagcccaagct |
37311514 |
T |
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| Q |
126 |
gcctcaaactacaaca |
141 |
Q |
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| T |
37311515 |
gcctcaaactgcaaca |
37311530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 22515539 - 22515614
Alignment:
| Q |
66 |
tcaattactaccttagtgttttcagatgttccagaagctatatttgtcaaagcccatgctgcctcaaactacaaca |
141 |
Q |
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| T |
22515539 |
tcaattaccaccttggtgtttttagatgttccagaagctatatttgtcaaaacccaagctgcctcaaactgcaaca |
22515614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 37312211 - 37312308
Alignment:
| Q |
217 |
aacctgcagctgtggaaaatcttccctcatcaagaactcaataaagcgaggaactacaccagcttgtataacctcctcaattggtgggctacgttctg |
314 |
Q |
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|||||||| ||| ||||| ||||||||||||| ||||| | ||| |||| ||| ||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
37312211 |
aacctgcaactgcggaaagtcttccctcatcagaaactcgacaaaacgagaaacaacaccagtctgtataacctcctcaatcggtggagtacgttctg |
37312308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 50192342 - 50192412
Alignment:
| Q |
66 |
tcaattactaccttagtgttttcagatgttccagaagctatatttgtcaaagcccatgctgcctcaaacta |
136 |
Q |
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| T |
50192342 |
tcaatcaccaccttagtgttctcagaagttccagatgctatgtttgtcagcgtccatgcagcctcaaacta |
50192412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 54862397 - 54862517
Alignment:
| Q |
16 |
catcactaggagaaccaaggagcttcacaaatattggtacagcacctgcctcaattactaccttagtgttttcagatgttccagaagctatatttgtcaa |
115 |
Q |
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||||||| || |||| ||| ||||| | |||||||||||| || || |||||||| ||||||||||| || || |||||||| ||||| ||||| | |
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| T |
54862397 |
catcacttggtgaactaagtagcttgataaatattggtactgccccatgatcaattaccaccttagtgttctccgaagttccagatgctatgtttgtgag |
54862496 |
T |
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| Q |
116 |
agcccatgctgcctcaaacta |
136 |
Q |
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||||| || ||||||||||| |
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| T |
54862497 |
tgcccaagcagcctcaaacta |
54862517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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