View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13944_low_21 (Length: 301)

Name: NF13944_low_21
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13944_low_21
NF13944_low_21
[»] chr5 (1 HSPs)
chr5 (12-301)||(7560528-7560821)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 7560821 - 7560528
Alignment:
Q  12 agagaaaatgcaaataaacatgtatataccattaccaaggcgggatgagcatgcagtggaatcgggaaggtaatctggtggttctggccggagaattggt 111  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7560821 agagaaaatgcaaataaacttgtacataccattaccaaggcgggatgagcatgcagtggaatcgggaaggtaatctggtggttctggccggagaattggt 7560722  T
Q  112 ttcggggttagttggatagggaagttgagaaccccttgcttggtaaacagtgaaaactccttcatctggtgccaataatgttggagtctgtgagactggt 211  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7560721 ttcggggttagttggatagggaagttgaaatccccttgcttggtaaacagcgaaaactccttcatctggtgccaataatgttggagtctgtgagactggt 7560622  T
Q  212 ttagtacagacagtagattatccagagaattaagagcaaaaacaaactatcttgatatttcaaaa----gaaaaatcatgttacttagaatcat 301  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||     ||||||||| ||||||||||||||    
T  7560621 ttagtacatacagtggattatccagagaattaagagcaaaaacaaaatatcttgatatttaaaaaaaataaaaaatcatattacttagaatcat 7560528  T

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