View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_low_24 (Length: 266)
Name: NF13944_low_24
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 43704769 - 43704516
Alignment:
| Q |
7 |
catttaccatttatcattttcctgtcatacacagtaaatatcttgcaacttccaagctgtttgaagcctaaaaaagattttgttttgtagctttccttgt |
106 |
Q |
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| T |
43704769 |
catttaccatttatcattttcctgtcatacacagtaaatatcttgcaacttgcaagctgtttgaagcctaaaaaagattttgttttgtagctttccttgt |
43704670 |
T |
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| Q |
107 |
gtagacatatttatgcagctgtcaccaagtcagtttctgaagattttgaattgagataaaaactgcaccctaaatgcaaacatatctggctgtatctaag |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
43704669 |
gtagacatatttatgcagctgtcaccaagtctgtttctgaaaattttgaattgagatataaactgcaccctaaatgcaaacatgtctggctgtatctaag |
43704570 |
T |
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| Q |
207 |
ttacacataaaagaaagacaaatcaaacacactactgaaactcaatgtaaagaa |
260 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
43704569 |
ttagacataaaagaaagacaaatcaaacacactacttaaactcaagttaaagaa |
43704516 |
T |
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