View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_low_25 (Length: 245)
Name: NF13944_low_25
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 29353740 - 29353528
Alignment:
| Q |
17 |
catccttttattttaaatttggaagaacaaaaaatatggctaaattttttcaataagttgagctttataaaattcaaatctttgaccaatttttcctctc |
116 |
Q |
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| T |
29353740 |
catccttttattttaaattggga-gaacaaaaaatatggctaaattttttcaataagttcagctttataaaattcaaatctttgaccaatttttcctctc |
29353642 |
T |
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| Q |
117 |
cctaaaatcactacnnnnnnnagaatttataaaatcactattaaatggagtacctcagtatacctagttccttagactagtttagtggtagtattaattt |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29353641 |
cctaaaatcacta-tttttttagaatttataaaatcactattaaatggagtacctcagtatacctagttccttagactagtttagtggtagtattaattt |
29353543 |
T |
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| Q |
217 |
tctcaaccatccaat |
231 |
Q |
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||||||| ||||||| |
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| T |
29353542 |
tctcaactatccaat |
29353528 |
T |
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