View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_low_3 (Length: 591)
Name: NF13944_low_3
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 49686387 - 49686042
Alignment:
| Q |
12 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatccta |
111 |
Q |
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| T |
49686387 |
atcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatccta |
49686288 |
T |
|
| Q |
112 |
ttctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactaca |
211 |
Q |
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| T |
49686287 |
ttctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactaca |
49686188 |
T |
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| Q |
212 |
caagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaactcactttttgctaaattctctgatactg |
311 |
Q |
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| T |
49686187 |
caagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctgatactg |
49686088 |
T |
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| Q |
312 |
attctctagaaaagtaaaacatgtactccttatgtcgcaccataat |
357 |
Q |
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| T |
49686087 |
attctctagaaaagtaaaacatgtactccttatgttgcaccataat |
49686042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 361 - 575
Target Start/End: Complemental strand, 49685982 - 49685768
Alignment:
| Q |
361 |
ataatatatccttctaagcaagtcttatgagtctgcgtctataattaaaacccacttccggctaagttttccactgtttgattctctgaaaactaaaaga |
460 |
Q |
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| T |
49685982 |
ataatatatccttctaagcaagtcttatgagtctgcgtctataattgaaacccacttccggctaagttttccactatttgattctctgaaaactaaaaga |
49685883 |
T |
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| Q |
461 |
gtaaaagacgttgtatcttactagcgtttcacatttcaaagcctagtttctcaaaagtattggtcaccagttttctaatatatatcttggttaatctctt |
560 |
Q |
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| T |
49685882 |
gtaaaagacgttgtatcttactagcgtttcacatttcaaagcctagtttctcaaaagtattggtcaccatttttctaatatatatcttggttaatctctt |
49685783 |
T |
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| Q |
561 |
aatctgactgatttg |
575 |
Q |
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| T |
49685782 |
aatctgactgatttg |
49685768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 49690647 - 49690421
Alignment:
| Q |
12 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactaga |
102 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||| | |
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| T |
49690647 |
atcaccactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaa |
49690548 |
T |
|
| Q |
103 |
gccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaa |
202 |
Q |
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| T |
49690547 |
gccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgacttggaaa |
49690451 |
T |
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| Q |
203 |
at---tactacacaagtcatgtgaatttgt |
229 |
Q |
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|| ||| ||||||||| ||| ||||||| |
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| T |
49690450 |
atgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 49679020 - 49678948
Alignment:
| Q |
12 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaaga |
84 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
49679020 |
atcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaga |
49678948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 49690378 - 49690319
Alignment:
| Q |
259 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctct |
318 |
Q |
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||||||||| |||||||||||||| ||||| ||||||||||||||| || | ||||||| |
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| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgctaataattctct |
49690319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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