View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13944_low_4 (Length: 566)

Name: NF13944_low_4
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13944_low_4
NF13944_low_4
[»] chr1 (18 HSPs)
chr1 (23-431)||(47771494-47771902)
chr1 (23-348)||(47775646-47775971)
chr1 (53-206)||(6525878-6526031)
chr1 (36-177)||(47710834-47710975)
chr1 (36-186)||(47715536-47715686)
chr1 (492-566)||(47771979-47772053)
chr1 (36-177)||(47700548-47700689)
chr1 (36-177)||(47743312-47743453)
chr1 (72-177)||(47757713-47757818)
chr1 (36-154)||(6514529-6514647)
chr1 (279-349)||(47757514-47757584)
chr1 (53-170)||(6502495-6502612)
chr1 (295-349)||(47715394-47715448)
chr1 (55-196)||(6510123-6510264)
chr1 (295-349)||(47710683-47710737)
chr1 (73-120)||(47679487-47679534)
chr1 (73-120)||(47691146-47691193)
chr1 (55-152)||(6497181-6497278)
[»] chr5 (4 HSPs)
chr5 (38-232)||(27367879-27368073)
chr5 (72-219)||(28826762-28826911)
chr5 (72-242)||(28859207-28859377)
chr5 (72-219)||(28843717-28843863)
[»] chr8 (1 HSPs)
chr8 (36-177)||(11225575-11225716)
[»] scaffold0341 (2 HSPs)
scaffold0341 (53-196)||(4147-4290)
scaffold0341 (53-196)||(11803-11946)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 47771494 - 47771902
Alignment:
Q  23 aggggaaggcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47771494 aggggaaggcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaa 47771593  T
Q  123 tgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagt 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771594 tgtagttgacagaccaaccatggctactgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagt 47771693  T
Q  223 ggaactagaagcctgcaagacatggagttatgggctggcaatataggttcaacaacatcgggtgaatcgatgaaccacgcttccaatactgatccatacc 322  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47771694 ggaaccagaagcctacaagacatggagttatgggctggcaatataggttcaacaacatcgggtgaatcggtgaaccacgcttccaatactgatccatacc 47771793  T
Q  323 ctcgatagaattcattcataagggtgaatatatattcttttatgtgtaaatcactaaattggtctataaaattgtaaaagttggtctctctgatatttag 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47771794 ctcgatagaattcattcataagggtgaatatatattcttttatgtgtaaatcactaaattggtctataaaattgtaaaagttggtctctctgaaatttag 47771893  T
Q  423 gaataaata 431  Q
    |||||||||    
T  47771894 gaataaata 47771902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 47775646 - 47775971
Alignment:
Q  23 aggggaaggcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaa 122  Q
    ||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47775646 aggggaaagcacacaatattatagatccagcattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaa 47775745  T
Q  123 tgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47775746 tgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagt 47775845  T
Q  223 ggaactagaagcctgcaagacatggagttatgggctggcaatataggttcaacaacatcgggtgaatcgatgaaccacgcttccaatactgatccatacc 322  Q
    |||||||||||||| || |||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||| ||||| ||||||||||||||||    
T  47775846 ggaactagaagcctacatgacatggagttatgggctggcaatatagattcaacagtatcgggtgaatcgattaaccaggcttcaaatactgatccatacc 47775945  T
Q  323 ctcgatagaattcattcataagggtg 348  Q
    ||||||| | ||||||||||||||||    
T  47775946 ctcgataaatttcattcataagggtg 47775971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 6525878 - 6526031
Alignment:
Q  53 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 152  Q
    |||||||||||  |||||  || |||||||||||||||||||| ||||  |||||||||||||||||||||| || |  ||| ||||| |||||| || |    
T  6525878 cattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctat 6525977  T
Q  153 tgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgc 206  Q
    || ||| |||||||||||| |||||||||||||||| | ||||||  |||||||    
T  6525978 tgtactaatgcttaatagtcattctctcactctctcgagaccttccgaacctgc 6526031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 47710975 - 47710834
Alignment:
Q  36 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 135  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47710975 aaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47710876  T
Q  136 ccaaccatggctgctgttgcactcatgcttaatagttattct 177  Q
    ||||| |||||  | |||||||||||||||| ||||||||||    
T  47710875 ccaactatggcaaccgttgcactcatgcttagtagttattct 47710834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 47715686 - 47715536
Alignment:
Q  36 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 135  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47715686 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47715587  T
Q  136 ccaaccatggctgctgttgcactcatgcttaatagttattctctcactctc 186  Q
    |||| ||||||  | |||| ||||||||||| |||||||| | ||||||||    
T  47715586 ccaatcatggcaaccgttgtactcatgcttagtagttattatatcactctc 47715536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 492 - 566
Target Start/End: Original strand, 47771979 - 47772053
Alignment:
Q  492 ttttagattatgatgtgctctagatagtgagacccgtgcgatgtatggggttggcgtataacttatttaagtatt 566  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  47771979 ttttagtttatgatatgctctagatagtgagacccgcgcgatgtgtggggttggcgtataacttatttaagtatt 47772053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 47700689 - 47700548
Alignment:
Q  36 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 135  Q
    |||||| |||||| || ||||||||||   ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47700689 aaatataatagatccatcattaaacaacggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47700590  T
Q  136 ccaaccatggctgctgttgcactcatgcttaatagttattct 177  Q
    |||| ||||||  |  ||| ||||||||||| ||||||||||    
T  47700589 ccaaacatggcaaccattgtactcatgcttagtagttattct 47700548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 47743453 - 47743312
Alignment:
Q  36 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 135  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  47743453 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 47743354  T
Q  136 ccaaccatggctgctgttgcactcatgcttaatagttattct 177  Q
    |||| ||||||  | |||| | ||||||||| ||||||||||    
T  47743353 ccaatcatggcaaccgttgtagtcatgcttagtagttattct 47743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 47757818 - 47757713
Alignment:
Q  72 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 171  Q
    ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| ||||||||||||||  |  ||| ||||||||||| ||||    
T  47757818 aaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaagaccaaccatggcaaccattgtactcatgcttagtagt 47757719  T
Q  172 tattct 177  Q
    ||||||    
T  47757718 tattct 47757713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 6514647 - 6514529
Alignment:
Q  36 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 135  Q
    |||||| |||||| || |||||||||||   |||  |||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||||| |  ||||    
T  6514647 aaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaagagaatgtagctagcaga 6514548  T
Q  136 ccaaccatggctgctgttg 154  Q
    |||||||||||| ||||||    
T  6514547 ccaaccatggcttctgttg 6514529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 47757584 - 47757514
Alignment:
Q  279 atcgggtgaatcgatgaaccacgcttccaatactgatccataccctcgatagaattcattcataagggtga 349  Q
    ||||||||||||||| ||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||    
T  47757584 atcgggtgaatcgataaaccatgcttcaattactgacccataccctcgatagatttcattcataagggtga 47757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 6502612 - 6502495
Alignment:
Q  53 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 152  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||| ||||  | ||||||||||||||| || |    
T  6502612 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccatggcttctat 6502513  T
Q  153 tgcactcatgcttaatag 170  Q
    || | | |||||||||||    
T  6502512 tgtagtgatgcttaatag 6502495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 47715448 - 47715394
Alignment:
Q  295 aaccacgcttccaatactgatccataccctcgatagaattcattcataagggtga 349  Q
    ||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  47715448 aaccatgcttcaattactgatccataccctcgatagatttcattcataagggtga 47715394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 6510264 - 6510123
Alignment:
Q  55 ttaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttg 154  Q
    |||||||||  ||||  |||||||||  | ||||| || |||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||||    
T  6510264 ttaaacaatgattcacgaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg 6510165  T
Q  155 cactcatgcttaatagttattctctcactctctcaatacctt 196  Q
     | | |||||||||||| ||||| | |||||| |||| ||||    
T  6510164 tagtgatgcttaatagtgattctgttactctcccaatgcctt 6510123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 47710737 - 47710683
Alignment:
Q  295 aaccacgcttccaatactgatccataccctcgatagaattcattcataagggtga 349  Q
    ||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||    
T  47710737 aaccatgcttcaattactgacccataccctcgatagatttcattcataagggtga 47710683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 47679487 - 47679534
Alignment:
Q  73 aatgaaataatgagatgcatccatattgccttactttgtgttcaagaa 120  Q
    ||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  47679487 aatgaaaaaatgagatgcatccatgttggattactttgtgttcaagaa 47679534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 47691146 - 47691193
Alignment:
Q  73 aatgaaataatgagatgcatccatattgccttactttgtgttcaagaa 120  Q
    ||||||| |||||||||||||||| |||  ||||||||||||||||||    
T  47691146 aatgaaacaatgagatgcatccatgttggattactttgtgttcaagaa 47691193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 6497278 - 6497181
Alignment:
Q  55 ttaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 152  Q
    |||||||||  ||||  |||||||||  ||||||| || |||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  6497278 ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgt 6497181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 27368073 - 27367879
Alignment:
Q  38 atatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagacc 137  Q
    |||| |||||| || ||||||| || ||||||  |||||||||  ||||||||||||| ||||  ||||| ||  ||||||||||  |  |||| |||||    
T  27368073 atattatagatccatcattaaaaaacatttcacaaaatgaaatcttgagatgcatccacattggtttactctgcattcaagaaaacttgattgatagacc 27367974  T
Q  138 aaccatggctgctgttgcactcatgcttaatagttattctctcactctctcaataccttcaaaacctgcctatttttatggaagtggaactagaa 232  Q
    |||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||   ||||||||||||||||    
T  27367973 aaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgcgtattttataggaagtggaactagaa 27367879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 28826911 - 28826762
Alignment:
Q  72 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgct---taat 168  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||| ||||| ||||||| | |  |||||||||||||| |  |||||||||||||   ||      
T  28826911 aaatgaaatcatgagatgcattcatattggcttactatgtgtccaagacaatgtagctaaacgaccaaccatggctaccattgcactcatgctaagtagc 28826812  T
Q  169 agttattctctcactctctcaataccttcaaaacctgcctatttttatgga 219  Q
    || ||||||||||||||| |||||||| || ||||||| | ||||||||||    
T  28826811 agctattctctcactctcccaatacctgcagaacctgcat-tttttatgga 28826762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 72 - 242
Target Start/End: Complemental strand, 28859377 - 28859207
Alignment:
Q  72 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 171  Q
    ||||||||| ||||||||||| |||||||  |||||||| || ||||| || |||  |   |||||||||||||||    ||| ||||||||| | |||     
T  28859377 aaatgaaatcatgagatgcattcatattggtttactttgcgtccaagacaacgtaactagaagaccaaccatggctaacattgtactcatgctaagtagc 28859278  T
Q  172 tattctctcactctctcaataccttcaaaacctgcctatttttatgga-agtggaactagaagcctgcaaga 242  Q
    ||||||||| | ||||| ||||||||| ||||||| | |||||||||| ||| ||||||||||||| |||||    
T  28859277 tattctctcgccctctctataccttcagaacctgcat-tttttatggatagtagaactagaagccttcaaga 28859207  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 28843863 - 28843717
Alignment:
Q  72 aaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttgcactcatgcttaatagt 171  Q
    ||||||||| ||||||||||| |||||||  ||||||||||| ||||| ||||||| |   |||| |||||||||| |  ||| |||  || | | |||     
T  28843863 aaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctagaagacgaaccatggctaccattgtacttctgataagtagc 28843764  T
Q  172 tattctctcactctctcaataccttcaaaacctgcctatttttatgga 219  Q
     |||||||||||||| | ||||||||| ||||||| | ||||||||||    
T  28843763 aattctctcactctccctataccttcagaacctgcat-tttttatgga 28843717  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 11225575 - 11225716
Alignment:
Q  36 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacaga 135  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||| ||||| ||||||||||||||| | ||||| |||    
T  11225575 aaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaaga 11225674  T
Q  136 ccaaccatggctgctgttgcactcatgcttaatagttattct 177  Q
    |||| ||||||  | |||| | ||||||||| ||||||||||    
T  11225675 ccaatcatggcaaccgttgtagtcatgcttagtagttattct 11225716  T

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Target: scaffold0341 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 4290 - 4147
Alignment:
Q  53 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 152  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  4290 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgt 4191  T
Q  153 tgcactcatgcttaatagttattctctcactctctcaatacctt 196  Q
    || | | |||||||||||| ||||| | |||||| |||| ||||    
T  4190 tgtagtgatgcttaatagtgattctgttactctcccaatgcctt 4147  T

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Target: scaffold0341; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 11946 - 11803
Alignment:
Q  53 cattaaacaatatttcagcaaatgaaataatgagatgcatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 152  Q
    |||||||||||  ||||  |||||||||| | ||||| ||||||||||  ||||||||||||||||| ||||||| |  ||| |||| ||||||| ||||    
T  11946 cattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgt 11847  T
Q  153 tgcactcatgcttaatagttattctctcactctctcaatacctt 196  Q
    || | | |||||||||||| ||||| | |||||| |||| ||||    
T  11846 tgtagtgatgcttaatagtgattctgttactctcccaatgcctt 11803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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