View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_high_12 (Length: 282)
Name: NF13945_high_12
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 48536115 - 48535845
Alignment:
| Q |
13 |
gagcaggttgttttctctgacccatacaaagtttctgagtataatcgttggacttcacctaatcttgaccgtgatgctgaggctgttcgggaagacaatc |
112 |
Q |
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| T |
48536115 |
gagcaggttgttttctctgacccatataaagtttctgagtataatcgttggacttcacctaatcttgaccgtgatgctgaggctgttcgggaagacaatc |
48536016 |
T |
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| Q |
113 |
tactgaagcttgaagttgctgagctaaaatcaaagtattatatatgtctcacactctcac-tttcttcttcttttaatgcagtagttttgttgtttgggt |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
48536015 |
tactaaagcttgaagttgctgagctaaaatcaaagtattatatatgtctcacactctcactttttttcttcttttaatgcagtagttttgttgtttgggt |
48535916 |
T |
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| Q |
212 |
ttttgttgatgaaaatttatgttcattcaggttctgtgagagggctcaggcactaatacatggagatctac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48535915 |
ttttgttgatgaaaatttatgttcattcaggttctgtgagagggctcaggcactaatacatggagatctac |
48535845 |
T |
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