View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_high_4 (Length: 476)
Name: NF13945_high_4
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 35687461 - 35687911
Alignment:
| Q |
18 |
agaacctgatccaagtgatatggtgcgcgcaatccagaaggcgataactatgctgcctaaaattgatcctcaagtcatgcacaatcgagtgagtttatag |
117 |
Q |
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| T |
35687461 |
agaacctgatccaagtgatatggtgcgcgcaatccagaaggcgataactatgctgcctaaaattgatcctcaagtcatgcacaatcgagtgagtttatag |
35687560 |
T |
|
| Q |
118 |
tttaattgacccttttcttttgctttcatcaggtaaactagttacttagtcagtctgtttattttctgtagatgagggaactctatagctggcatgatgt |
217 |
Q |
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| T |
35687561 |
tttaattgacccttttcttttgctttcatcaggtaaactagttacttagtcagtctgtttattttctgtagatgagggaactctatagctggcatgatgt |
35687660 |
T |
|
| Q |
218 |
tgccaaaagaaccgaaattgtatatgatcgtgctttgaagtgttctgatcaaaatctacttgaacgactctcacggtacacacttttataggttcaatat |
317 |
Q |
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| T |
35687661 |
tgccaaaagaaccgaaattgtatatgatcgtgctttgaagtgttctgatcaaaatctacttgaacgactctcacggtacacactttcataggttcaatat |
35687760 |
T |
|
| Q |
318 |
aattctaatatgaacatctagttgtaaaagaaaatccactggtcattctgtttcatttatgtgattttttgtattctaattacctgagcataaaattatt |
417 |
Q |
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| T |
35687761 |
aattctaatatgaacatctagttgtaaaagaaaatccactggtcattctgtttcatttatgtga-tttttgtattctaattacctgagcataaaattatt |
35687859 |
T |
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| Q |
418 |
taatctgcttgtaacttaagatggttggtagtaaaacaacgtattttcttgg |
469 |
Q |
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| T |
35687860 |
taatctgcttgtaacttaagatggttggtagtaaaacaaggtatttttttgg |
35687911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 40670522 - 40670406
Alignment:
| Q |
179 |
ttttctgtagatgagggaactctatagctggcatgatgttgccaaaagaaccgaaattgtatatgatcgtgctttgaagtgttctgatcaaaatctactt |
278 |
Q |
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|||||||||| ||||||| |||||| |||| | |||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
40670522 |
ttttctgtaggtgagggagctctatgactggaacgatgttgccaaaaggactgaaattgtgtatgaccgtgctttgaagtgttccgatcaaaatctacta |
40670423 |
T |
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| Q |
279 |
gaacgactctcacggta |
295 |
Q |
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|| || ||||||||||| |
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| T |
40670422 |
gagcgtctctcacggta |
40670406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 40670873 - 40670778
Alignment:
| Q |
18 |
agaacctgatccaagtgatatggtgcgcgcaatccagaaggcgataactatgctgcctaaaattgatcctcaagtcatgcacaatcgagtgagttt |
113 |
Q |
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|||||||||||| |||||||||||| ||||| | ||||| ||| ||||||||| ||||||||||| ||||| ||||| |||||||| ||||| |
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| T |
40670873 |
agaacctgatcccagtgatatggtgtatgcaatagaaaaggccatacatatgctgccaaaaattgatccacaagttatgcataatcgagtaagttt |
40670778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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