View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_high_6 (Length: 377)
Name: NF13945_high_6
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 2347474 - 2347120
Alignment:
| Q |
13 |
aaaatgctaagattcatttaaccaaaataatcaaaatgcagggtaaaaatgatagacaaacttttaagggaacaattgcatcacaacacatcattcacat |
112 |
Q |
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| T |
2347474 |
aaaatgctaagattcatttaaccaaaataatcaaaatgcagagtaaaaatgatagacaaacttttaagggaacaattgcatcacaacacatcattcacat |
2347375 |
T |
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| Q |
113 |
gacgcgtaccgcaaacccgtaccaacatgaattgcaaattatgtgactattgttcaactcacttgtataatggctctgtgcaccatataggtaattccct |
212 |
Q |
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| T |
2347374 |
gtcgcgtaccgcaaacccgtaccaacatgaattgcaaattatgtgactatggttcaactcacttgtataatggctctgtgcaccatataggtaattccct |
2347275 |
T |
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| Q |
213 |
ggactcccctcgtgaccgaacactaatgtcaggatgtattgaaactacaat-----tgtggaaggtattgaatgttgata-ttgattgataaagaaacct |
306 |
Q |
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||||| |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2347274 |
ggacttccctcgtgaccgaagactaatgtctggatgtattgaaactacaattgtgttgtggaaggtattgaatgttgatatttgattgataaagaaacct |
2347175 |
T |
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| Q |
307 |
taccaaacnnnnnnnnctcaaaagtcagaagcagataaatcagtggaagttcatat |
362 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2347174 |
taccaaac-aaaaaaactcaaaagtcagaagcagataaatcagtggaagttcatat |
2347120 |
T |
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