View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_1 (Length: 587)
Name: NF13945_low_1
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 24 - 572
Target Start/End: Original strand, 38751989 - 38752537
Alignment:
| Q |
24 |
actaactaaagaagatacttactaaaacaatgaataaggatatagagaacatagaagttagaatttgaagattctcacatatgtatttagttgcctaaca |
123 |
Q |
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| T |
38751989 |
actaactaaagaagatacttactaaaacaatgaataaggatatatagaacatagaagttagaatttgaagattctcacatatgtatttagttgcctaaca |
38752088 |
T |
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| Q |
124 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752089 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaag |
38752188 |
T |
|
| Q |
224 |
atacaatgtggtcagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgatttctgagactccatagtgaacaccatgtt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752189 |
atacaatgtggtcagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgatttctgagactccatagtgaacaccatgtt |
38752288 |
T |
|
| Q |
324 |
atcttcacacctctctaatgtgaaagccatcacactaaaccaaagacttttgtgctacttatctaattttatgctttgttatgttatagtattctcttac |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752289 |
atcttcacacctctctaatgtgaaagccatcacactaaaccaaagacttttgtgctacttatctaattttatgctttgttatgttatagtattctcttac |
38752388 |
T |
|
| Q |
424 |
tcattcactaatgcaccaccgagtttaaaataacctctatcactctctttctattagagcaacgccgcttattctcaaataattcactagttttgattag |
523 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| ||| |||||| ||||||||| |
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| T |
38752389 |
tcattcactaatgcaccaccaagtttaaaataacctctctcactctctttctattagagcaacacctcttattcacaatgaatacactaggtttgattag |
38752488 |
T |
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| Q |
524 |
agatttcagccaattgtgcctacgtatccgactataaaattgttgtaat |
572 |
Q |
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||| ||| |||||||||||||||||||||||||| ||| | |||||||| |
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| T |
38752489 |
agagttcggccaattgtgcctacgtatccgactacaaagtggttgtaat |
38752537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 12478731 - 12478780
Alignment:
| Q |
124 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagc |
173 |
Q |
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| T |
12478731 |
aagcttgagaaattgttatgcttgaaaaacttcggcagaaggtctctagc |
12478780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 296
Target Start/End: Original strand, 46927073 - 46927245
Alignment:
| Q |
124 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaag |
223 |
Q |
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||||| ||||||||||| || ||||| | || || || || ||||||||||| |||||||| | ||||||||| || || | ||||| |||| ||||| |
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| T |
46927073 |
aagctagagaagttgttgtgtttgaagtagttagggaggaggtctctagcaaattcaggaggacgccaaacaacgaaggtggagtcatcttcaccccaag |
46927172 |
T |
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| Q |
224 |
atacaatgtggtcagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgattt |
296 |
Q |
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| T |
46927173 |
aaacgatgtgatctgtggctggatcatcaacaagttggtatgttttggtgaggaatggagctgggactgattt |
46927245 |
T |
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