View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13945_low_10 (Length: 324)

Name: NF13945_low_10
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13945_low_10
NF13945_low_10
[»] chr5 (6 HSPs)
chr5 (13-307)||(41422377-41422674)
chr5 (87-307)||(14672429-14672656)
chr5 (206-307)||(41423211-41423313)
chr5 (148-211)||(41574205-41574266)
chr5 (206-260)||(41423124-41423178)
chr5 (125-198)||(43543961-43544036)
[»] chr3 (10 HSPs)
chr3 (13-307)||(30575631-30575927)
chr3 (13-307)||(6529922-6530216)
chr3 (89-307)||(30574546-30574765)
chr3 (89-307)||(6528909-6529128)
chr3 (85-233)||(43679023-43679171)
chr3 (175-221)||(19319373-19319419)
chr3 (175-221)||(19316656-19316704)
chr3 (175-220)||(44211461-44211508)
chr3 (148-203)||(14414428-14414482)
chr3 (171-221)||(41513457-41513509)
[»] chr4 (9 HSPs)
chr4 (13-307)||(30100346-30100641)
chr4 (89-307)||(30101491-30101710)
chr4 (87-298)||(56331911-56332126)
chr4 (88-293)||(48367592-48367805)
chr4 (89-247)||(13417824-13417994)
chr4 (92-152)||(52038692-52038752)
chr4 (171-214)||(42819465-42819508)
chr4 (242-307)||(52038756-52038822)
chr4 (145-192)||(50580308-50580356)
[»] chr7 (8 HSPs)
chr7 (13-293)||(15742281-15742569)
chr7 (89-307)||(15743420-15743639)
chr7 (139-307)||(29418237-29418415)
chr7 (175-214)||(40692142-40692181)
chr7 (90-132)||(24956175-24956217)
chr7 (89-148)||(29417094-29417150)
chr7 (148-202)||(41495865-41495917)
chr7 (175-220)||(12018555-12018602)
[»] chr6 (5 HSPs)
chr6 (13-293)||(1573807-1574095)
chr6 (87-307)||(29657375-29657599)
chr6 (89-293)||(1572672-1572884)
chr6 (112-307)||(11381540-11381746)
chr6 (168-214)||(30575034-30575080)
[»] chr1 (10 HSPs)
chr1 (13-293)||(28875540-28875828)
chr1 (13-293)||(51836513-51836801)
chr1 (89-307)||(28876679-28876898)
chr1 (88-307)||(51837685-51837905)
chr1 (92-307)||(37810947-37811165)
chr1 (92-307)||(44031485-44031691)
chr1 (89-290)||(19620280-19620484)
chr1 (128-221)||(44872902-44872995)
chr1 (148-214)||(21899530-21899594)
chr1 (69-214)||(41642222-41642365)
[»] chr2 (8 HSPs)
chr2 (92-307)||(44112865-44113081)
chr2 (88-307)||(4518894-4519107)
chr2 (236-307)||(44112795-44112866)
chr2 (174-214)||(44503206-44503246)
chr2 (168-214)||(3029966-3030012)
chr2 (168-214)||(19019667-19019713)
chr2 (179-221)||(4250978-4251022)
chr2 (92-133)||(20996175-20996216)
[»] chr8 (5 HSPs)
chr8 (18-234)||(13046399-13046619)
chr8 (87-290)||(13047708-13047915)
chr8 (148-214)||(30955157-30955221)
chr8 (148-214)||(30957810-30957874)
chr8 (178-214)||(36824595-36824631)
[»] scaffold0710 (1 HSPs)
scaffold0710 (88-179)||(2754-2845)
[»] scaffold0242 (4 HSPs)
scaffold0242 (175-214)||(11672-11711)
scaffold0242 (175-214)||(20507-20546)
scaffold0242 (175-221)||(7057-7105)
scaffold0242 (175-221)||(9361-9409)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 41422674 - 41422377
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41422674 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccgaattaaagaga 41422575  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctct-- 210  Q
    |||| || |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||      
T  41422574 aacagaataaatagtattatagattgaatagaaaatattaccgaagattatccctctataatcccagagcaaaagctcctcagagaagagacatctctct 41422475  T
Q  211 ctctgcccaaaaccaataaggttcttaattaaataattatgaattcc-ccccactgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
    |||||||||||||||| ||||||| ||||||||||||| |||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41422474 ctctgcccaaaaccaacaaggttcctaattaaataattctgaaatcctctccactgttgtggccaaatggccttatttatacaaacaaagggcataaa 41422377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 87 - 307
Target Start/End: Complemental strand, 14672656 - 14672429
Alignment:
Q  87 attgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaa 186  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  14672656 attgataggaacccgaattaaagagaaacagaataaatagtattatagattgaatagaaaatattaccgaagattatccctctgtaatcccaaagcaaaa 14672557  T
Q  187 gctcctcagagaagagacatctct--------ctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatg 278  Q
    ||||||||||||||||||||||||        |||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||    
T  14672556 gctcctcagagaagagacatctctctctctctctctgcccaaaaccaataagtttcctaattaaataattatgaatt-cccctactgttgtggccaaatg 14672458  T
Q  279 accttatttatacaaacaaagggcataaa 307  Q
     ||||||||||||||| ||||||||||||    
T  14672457 gccttatttatacaaagaaagggcataaa 14672429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 41423211 - 41423313
Alignment:
Q  206 tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattcc-ccccactgttgtggccaaatgaccttatttatacaaacaaagggcat 304  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||| ||| | |||||||| |||||||||| |||||||||||||||||||||||||    
T  41423211 tctctctctgcccaaaaccaataaggttcctaattaaataattctgaaatcctctccactgttctggccaaatggccttatttatacaaacaaagggcat 41423310  T
Q  305 aaa 307  Q
    |||    
T  41423311 aaa 41423313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 41574205 - 41574266
Alignment:
Q  148 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctc 211  Q
    ||||||||||||| | ||||  |||| |||||||||||||||||||||||||||||||| ||||    
T  41574205 tattacagaagataacccct--gtaaccccagagcaaaagctcctcagagaagagacatttctc 41574266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 41423178 - 41423124
Alignment:
Q  206 tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattccccc 260  Q
    ||||||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||    
T  41423178 tctctctctgcccaaaaccaacaaggttcctaattgaattattttgaattccccc 41423124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 43543961 - 43544036
Alignment:
Q  125 agtattatagattgaaaagaaaat---attacagaagattatccctctgtaatcccagagcaaaagctcctcagaga 198  Q
    |||||||| ||||||||| ||||    ||| |||||||||| ||| || ||||||||||||||||||||||||||||    
T  43543961 agtattattgattgaaaaaaaaaatacattgcagaagattaaccc-ctataatcccagagcaaaagctcctcagaga 43544036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 30575631 - 30575927
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30575631 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaatt-aagaga 30575729  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca--tctct 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||  |||||    
T  30575730 aacaaaagaaatagtattatagattgaatagaaaatattacagaagagtatccctttgtaatcccaaagcaaaagctcctcagagaagagacatttctct 30575829  T
Q  211 ctctgcccaaaaccaataaggttcttaattaaataattatgaattcc-ccccactgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
    |||||||||||||||||||||||| ||||| ||||||| |||| ||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  30575830 ctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctccactgttgtggccaaatggccttatttatacaaagaaagggcataaa 30575927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 6529922 - 6530216
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6529922 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaa-gaga 6530020  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca--tctct 210  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  6530021 aacaaaagaaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctct 6530120  T
Q  211 ctctgcccaaaaccaataaggttcttaattaaataattatgaattcc-ccccactgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
     ||||||||||||||||||||||| ||||| ||||||| |||||||| ||| |||||||||| |||||| || ||||||||| ||| |||||||||||    
T  6530121 ttctgcccaaaaccaataaggttcctaattgaataattctgaattcctccctactgttgtggtcaaatggcc-tatttatac-aactaagggcataaa 6530216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 30574546 - 30574765
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    ||||||||||||||||||| |||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30574546 tgataggaacccaaattaa-gagaaacaaaaggaatactattattgattgaaaataaaatattacagaagattatccctctgtaatcccagagcaaaagc 30574644  T
Q  189 tcctcagagaagagaca--tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatt 286  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| | ||| | | |||| |||||||||||||| |||||||    
T  30574645 tcctcagagaagagacatttctctctctgcccaaaaccaataaggttcctaattgaataattctcaatcctctccaccgttgtggccaaatggccttatt 30574744  T
Q  287 tatacaaacaaagggcataaa 307  Q
    |||||||||||||||||||||    
T  30574745 tatacaaacaaagggcataaa 30574765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 6528909 - 6529128
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6528909 tgataggaacccaaattaa-gagaaacaaaagaaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 6529007  T
Q  189 tcctcagagaagagaca--tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattcc-ccccactgttgtggccaaatgaccttat 285  Q
    |||||| ||||||||||  ||||| ||||||||||||||||||||||| ||||| ||||||| |||||||| ||| |||||||||| |||||| ||||||    
T  6529008 tcctcaaagaagagacatttctctttctgcccaaaaccaataaggttcctaattgaataattctgaattcctccctactgttgtggtcaaatggccttat 6529107  T
Q  286 ttatacaaacaaagggcataaa 307  Q
    |||||| ||| |||||||||||    
T  6529108 ttatac-aactaagggcataaa 6529128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 43679171 - 43679023
Alignment:
Q  85 caattgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaa 184  Q
    |||||| ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  43679171 caattgttaggaacctgaattaaagagaaacaaaaggaatagtattattgattgaaaagaaaatattacagaagat--tccctctgtaatcctagagcaa 43679074  T
Q  185 aagctcctcagagaagagaca--tctctctctgcccaaaaccaataaggtt 233  Q
    | |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  43679073 acgctcctcagagaagagacatttctctctctgcccaaaaccaataaggtt 43679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 19319419 - 19319373
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagacatctctctctgcccaaa 221  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  19319419 cccagagcaaaagctcctcagagaagagacatttctctctgcccaaa 19319373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 19316704 - 19316656
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagaca--tctctctctgcccaaa 221  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  19316704 cccagagcaaaagctcctcagagaagagacatttctctctctgcccaaa 19316656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 44211508 - 44211461
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagaca--tctctctctgcccaa 220  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  44211508 cccagagcaaaagctcctcagagaagagacatttctctctctgcccaa 44211461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 14414428 - 14414482
Alignment:
Q  148 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagaga 203  Q
    ||||||| ||||||| ||| |||||||||||||||||| ||||||||||| |||||    
T  14414428 tattacataagattaaccc-ctgtaatcccagagcaaatgctcctcagaggagaga 14414482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 41513457 - 41513509
Alignment:
Q  171 taatcccagagcaaaagctcctcagagaagagaca--tctctctctgcccaaa 221  Q
    |||||||||||||| ||||||| |||||||| |||  ||||||||||||||||    
T  41513457 taatcccagagcaagagctccttagagaagaaacatttctctctctgcccaaa 41513509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 30100641 - 30100346
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30100641 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgcatccggtaggtcggaccaattgataggaacccgaattaaagaga 30100542  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctct-- 210  Q
    |||| || |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||      
T  30100541 aacagaataaatagtattatagattgaatagaaaatattatcgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctct 30100442  T
Q  211 ctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  30100441 ctctgcccaaaaccaataagtttcctaattaaataattatgaatt-cccctactgttgtggccaaatggccttatatatacaaagaaagggcataaa 30100346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 30101710 - 30101491
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    |||||||||||| ||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  30101710 tgataggaacccgaattaaagagaaacagaataaatagtattataggttgaatagaaaatattacagaagattatccctctctaatcccagagcaaaagc 30101611  T
Q  189 tcctcagagaagagacatctct--ctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatt 286  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  30101610 tcctcagagaagagacatctctctctctgcccaaaaccaataaggttcctaattaaataattatgaatt-cccctactgttgtggccaaatggccttatt 30101512  T
Q  287 tatacaaacaaagggcataaa 307  Q
    |||||||| ||||||||||||    
T  30101511 tatacaaagaaagggcataaa 30101491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 87 - 298
Target Start/End: Complemental strand, 56332126 - 56331911
Alignment:
Q  87 attgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaa 186  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  56332126 attgttaggaacccgaattaaagagaaacaaaagaaatagtattattgattgaaaagaaaatattacagaagattatccctctgtaatcctagagcaaaa 56332027  T
Q  187 gctcctcagagaagagaca----tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgacct 282  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||| ||||||||||||||||| | |    
T  56332026 gctcctcagagaagagacatttctctctctctgcccaaaaccaataaggtttctaatttaataattctgaattccccctactgttgtggccaaatggcat 56331927  T
Q  283 tatttatacaaacaaa 298  Q
    ||||||||||||||||    
T  56331926 tatttatacaaacaaa 56331911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 88 - 293
Target Start/End: Complemental strand, 48367805 - 48367592
Alignment:
Q  88 ttgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaag 187  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48367805 ttgataggaacccgaattaaagagaaacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaag 48367706  T
Q  188 ctcctcagagaagagaca------tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc--cccccactgttgtggccaaatga 279  Q
    ||||||||||||||||||      ||||||||||||||||||||||||||||| ||||| ||||||| |||| ||  | || |||||||||| ||||||     
T  48367705 ctcctcagagaagagacatcactctctctctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatgg 48367606  T
Q  280 ccttatttatacaa 293  Q
    | ||||||||||||    
T  48367605 ctttatttatacaa 48367592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 247
Target Start/End: Complemental strand, 13417994 - 13417824
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaa-gaaatagtatt-----atagattgaaaagaaaatattacagaagattatc----cctctgtaatccca 178  Q
    |||||||||||| |||||||||||||||||| ||||||||| |     || ||||||||||||||||||||||||||||||     |||||  |||||||    
T  13417994 tgataggaacccgaattaaagagaaacaaaaagaaatagtaattaaatattgattgaaaagaaaatattacagaagattatttattcctcttcaatccca 13417895  T
Q  179 gagcaaaagctcctcagagaagagacat--ctctctctgcccaaaaccaataaggttcttaattaaataat 247  Q
    |||||| |||||| ||||||||| ||||  |||||||||||||||||||||||||||| ||| | ||||||    
T  13417894 gagcaagagctccacagagaagatacatttctctctctgcccaaaaccaataaggttcctaactgaataat 13417824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 52038692 - 52038752
Alignment:
Q  92 taggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatatta 152  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  52038692 taggaacccgaattaaagagaaacaaaagaaataatattatagattaaaaagaaaatatta 52038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 42819508 - 42819465
Alignment:
Q  171 taatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  42819508 taatcccagagcaagagctcctcagagaagagacatttctctct 42819465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 52038756 - 52038822
Alignment:
Q  242 aataattatgaattcccccc-actgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
    ||||||| |||| ||| ||| |||||||||||||||||  ||||||||||||||| |||||||||||    
T  52038756 aataattctgaaatcctccctactgttgtggccaaatggtcttatttatacaaactaagggcataaa 52038822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 50580356 - 50580308
Alignment:
Q  145 aaatattacagaagattatccc-tctgtaatcccagagcaaaagctcct 192  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  50580356 aaatattacagaagattaacccctctgtaatcccagagcaaatgctcct 50580308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 15742569 - 15742281
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15742569 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccgaattaaagaga 15742470  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca------t 206  Q
    |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |    
T  15742469 aacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactct 15742370  T
Q  207 ctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc--cccccactgttgtggccaaatgaccttatttatacaa 293  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||| ||  | || |||||||||| |||||| | ||||||||||||    
T  15742369 ctctctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatacaa 15742281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 15743639 - 15743420
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15743639 tgataggaacccgaattaaagagaaacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 15743540  T
Q  189 tcctcagagaagagacatctct--ctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatt 286  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  15743539 tcctcagagaagagacatctctctctctgcccaaaaccaataagtttcctaattaaataattatgaatt-cccctactgttgtggccaaatggccttatt 15743441  T
Q  287 tatacaaacaaagggcataaa 307  Q
    |||||||| ||||||||||||    
T  15743440 tatacaaagaaagggcataaa 15743420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 29418237 - 29418415
Alignment:
Q  139 aaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat------------ctctctctgcccaaaaccaa 226  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||            ||||||||||||||||||||    
T  29418237 aaaagaaaatattacagaagatt--ccctctgtaatcctagagcaaaagctcctcagagaagagacatttctctctctctctctctctgcccaaaaccaa 29418334  T
Q  227 taaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
    |||||||| ||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  29418335 taaggttcctaattgaataattctgaattctccctactgttgtggccaaatggccttatttatacaaacaaagggcataaa 29418415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 40692181 - 40692142
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  40692181 cccagagcaaaagctcctcagagaagagacatttctctct 40692142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 24956217 - 24956175
Alignment:
Q  90 gataggaacccaaattaaagagaaacaaaagaaatagtattat 132  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  24956217 gataggaacccaaattagagagaaacaaaagaaataatattat 24956175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 29417094 - 29417150
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaat 148  Q
    ||||||||| ||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  29417094 tgataggaatccaaattaa-gagaaacaa--gaaataatattatagattgaaaagaaaat 29417150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 41495917 - 41495865
Alignment:
Q  148 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagag 202  Q
    ||||||||||||| | ||||  |||| ||||||||||||||||||||||||||||    
T  41495917 tattacagaagataacccct--gtaaccccagagcaaaagctcctcagagaagag 41495865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12018555 - 12018602
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagaca--tctctctctgcccaa 220  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||||    
T  12018555 cccagagcaaaagctcctcagataagagatatttctctctctgcccaa 12018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 1573807 - 1574095
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1573807 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccgaattaaagaga 1573906  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca------t 206  Q
    |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |    
T  1573907 aacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactct 1574006  T
Q  207 ctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc--cccccactgttgtggccaaatgaccttatttatacaa 293  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||| ||  | || |||||||||| |||||| | ||||||||||||    
T  1574007 ctctctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatacaa 1574095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 87 - 307
Target Start/End: Complemental strand, 29657599 - 29657375
Alignment:
Q  87 attgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaa 186  Q
    |||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  29657599 attgataggagcccgaattaaagagaaacaaaataaatagtattatagattgaatagaaaatattaccgaagattatccctctgtaatcccaaagcaaaa 29657500  T
Q  187 gctcctcagagaagagacatctct--ctctgcccaaaaccaataaggttcttaattaaataattatg---aattccccccactgttgtggccaaatgacc 281  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||| ||   ||| ||||| |||||||||| |||||| ||    
T  29657499 gctcctcagagaagagacatctctctctctgcccaaaaccaataaggttcctaattgaataattctgaaaaatcccccctactgttgtggtcaaatggcc 29657400  T
Q  282 ttatttatacaaacaaagggcataaa 307  Q
    |||||||||| ||| |||||||||||    
T  29657399 ttatttatac-aactaagggcataaa 29657375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 1572672 - 1572884
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1572672 tgataggaacccgaattaaagagaaacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 1572771  T
Q  189 tcctcagagaagagaca------tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc--cccccactgttgtggccaaatgac 280  Q
    |||||||||||||||||      ||||||||||||||||||||||||||||| ||||| ||||||| |||| ||  | || |||||||||| |||||| |    
T  1572772 tcctcagagaagagacatcactctctctctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggc 1572871  T
Q  281 cttatttatacaa 293  Q
     ||||||||||||    
T  1572872 tttatttatacaa 1572884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 11381746 - 11381540
Alignment:
Q  112 aaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccc-----------tctgtaatcccagagcaaaagctcctcagagaag 200  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||           |||||||||||| |||||||||||||| ||||||    
T  11381746 aaacaaaagaaattgtattattgattgaaaagaaaatattacagaagattatcccaagattaaccctctgtaatcccatagcaaaagctcctcggagaag 11381647  T
Q  201 agacatctctctctgccc-aaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatttatacaaacaaag 299  Q
    ||||||||||||| |||| |||| ||||||||||  ||||| ||||||| | |||||||| | ||||||||||||||||  |||||||||||||||||||    
T  11381646 agacatctctctccgcccaaaaagcaataaggtttctaattgaataattctcaattcccctc-ctgttgtggccaaatggtcttatttatacaaacaaag 11381548  T
Q  300 ggcataaa 307  Q
    ||||||||    
T  11381547 ggcataaa 11381540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 30575034 - 30575080
Alignment:
Q  168 ctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||    
T  30575034 ctgtaaccccagagcaaaagctcctcagagaagagacatttctctct 30575080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 28875828 - 28875540
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28875828 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccgaattaaagaga 28875729  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca------t 206  Q
    |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |    
T  28875728 aacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcaatct 28875629  T
Q  207 ctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc--cccccactgttgtggccaaatgaccttatttatacaa 293  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||| ||  | || |||||||||| |||||| | ||||||||||||    
T  28875628 ctctctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatacaa 28875540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 51836801 - 51836513
Alignment:
Q  13 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccaaattaaagaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51836801 ttatacttcaaagtccatattccatccatctccgataacactggtttccttctcgtatccggtaggtcggaccaattgataggaacccgaattaaagaga 51836702  T
Q  113 aacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca------t 206  Q
    |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |    
T  51836701 aacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatcactct 51836602  T
Q  207 ctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc--cccccactgttgtggccaaatgaccttatttatacaa 293  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||| ||  | || |||||||||| |||||| | ||||||||||||    
T  51836601 ctctctctgcccaaaaccaataaggttcctaattgaataattctgaaatcctctcctactgttgtggtcaaatggctttatttatacaa 51836513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 28876898 - 28876679
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28876898 tgataggaacccgaattaaagagaaacagaataaatagtattatagattgaatagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 28876799  T
Q  189 tcctcagagaagagacatctct--ctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatt 286  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  28876798 tcctcagagaagagacatctctctctctgcccaaaaccaataagtttcctaattaaataattatgaatt-cccctactgttgtggccaaatggccttatt 28876700  T
Q  287 tatacaaacaaagggcataaa 307  Q
    |||||||| ||||||||||||    
T  28876699 tatacaaagaaagggcataaa 28876679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 88 - 307
Target Start/End: Complemental strand, 51837905 - 51837685
Alignment:
Q  88 ttgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaag 187  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  51837905 ttgataggaacccgaatcaaagagaaacataataaatagtattatagattgaatagaaaatattactgaagattatccctctgtaattccagagcaaaag 51837806  T
Q  188 ctcctcagagaagagacatctct--ctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttat 285  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  51837805 ctcctcagagaagagacatctctctctctgcccaaaaccaataaggttattaattaaataattatgaatt-cccccactgttgtggccaaatggccttat 51837707  T
Q  286 ttatacaaacaaagggcataaa 307  Q
    ||||||||| ||||||||||||    
T  51837706 ttatacaaagaaagggcataaa 51837685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 92 - 307
Target Start/End: Complemental strand, 37811165 - 37810947
Alignment:
Q  92 taggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcc 191  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37811165 taggaacccgaattaaagagaaacaaaagaaataatattatagattgaaaagaaaatattacagaagattacccctctgtaatcccagagcaaaagctcc 37811066  T
Q  192 tcagagaagagaca--tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattcc-ccccactgttgtggccaaatgaccttattta 288  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||  ||||| ||||||| |||| ||| ||| || ||||||||||||||  ||||||||    
T  37811065 tcagagaagagacatttctgtctctgcccaaaaccaataaggtttctaattgaataattctgaaatcctccctaccgttgtggccaaatggtcttattta 37810966  T
Q  289 tacaaacaaagggcataaa 307  Q
    ||||||| |||||||||||    
T  37810965 tacaaactaagggcataaa 37810947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 44031485 - 44031691
Alignment:
Q  92 taggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcc 191  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44031485 taggaacccgaattaaagagaaacaaaagaaataatattatagatttaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcc 44031584  T
Q  192 tcagagaagagaca--tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatttat 289  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| ||           ||||||||||||||||  |||||||||    
T  44031585 tcagagaagagacatttctctctctgcccaaaaccaataaggttcctaattgaataattctg-----------ctgttgtggccaaatggtcttatttat 44031673  T
Q  290 acaaacaaagggcataaa 307  Q
    |||||| |||||||||||    
T  44031674 acaaactaagggcataaa 44031691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 290
Target Start/End: Original strand, 19620280 - 19620484
Alignment:
Q  89 tgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagc 188  Q
    ||||||||| ||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||    
T  19620280 tgataggaagccaaattgaagagatacaaaagaaataatattattgattgaaaagaaaatattacagaagattatgcctctataattccagagcaagagc 19620379  T
Q  189 tcctcagagaagagaca--tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattc-cccccactgttgtggccaaatgaccttat 285  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  || ||||||| ||||||| |  ||| || |||||||||||||||| ||||    
T  19620380 tcctcagagaagagacatttctctctctgcccaaaaccaatatggttccaaactaaataaatatgaatccttccctacagttgtggccaaatgacgttat 19620479  T
Q  286 ttata 290  Q
    |||||    
T  19620480 ttata 19620484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 44872902 - 44872995
Alignment:
Q  128 attatagattgaaaag-aaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagaca--tctctctctgcccaaa 221  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||  || |||||||||||  | ||||||||||||||    
T  44872902 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 44872995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 21899594 - 21899530
Alignment:
Q  148 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    ||||||||||||| |||  ||||||| || ||||||||||||||||||||||||||||| |||||||    
T  21899594 tattacagaagataatc--tctgtaaccctagagcaaaagctcctcagagaagagacatttctctct 21899530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 41642365 - 41642222
Alignment:
Q  69 atccggtaggtcggaccaattgataggaacccaaattaaagagaaacaaaagaaatagtattataga-ttgaaaagaaaa-tattacagaagattatccc 166  Q
    |||||||||||||||||||||||||| ||| | |||| |  |||||  ||| |||| ||||||| || ||||||| | |  |||||||||||||  |||     
T  41642365 atccggtaggtcggaccaattgatagaaactcgaattcac-agaaaagaaataaattgtattattgaattgaaaatagatgtattacagaagatagtcc- 41642268  T
Q  167 tctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
      ||||| || |||||| |||||||||||||||||||||| |||||||    
T  41642267 --tgtaaccctagagcagaagctcctcagagaagagacatttctctct 41642222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 44112865 - 44113081
Alignment:
Q  92 taggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcc 191  Q
    |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44112865 taggaatccgaattaaagagaaacaaaagaaataatattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaacagctcc 44112964  T
Q  192 tcagagaagagaca--tctctctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttatttat 289  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||| ||| | ||||||| |||||| |||| |||||||| ||||||||  |||||||||    
T  44112965 tcagagaagagacatttctctctctgcccaaaaccaatatggttcctaactgaataattctgaatt-cccctactgttgtagccaaatggtcttatttat 44113063  T
Q  290 acaaacaaagggcataaa 307  Q
    |||||| |||||||||||    
T  44113064 acaaactaagggcataaa 44113081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 307
Target Start/End: Complemental strand, 4519107 - 4518894
Alignment:
Q  88 ttgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaag 187  Q
    |||||||||||||||||||| |||||||||||| |||| |||||| ||||||||| ||||||||||      |||||| |||||||||||||||||||||    
T  4519107 ttgataggaacccaaattaa-gagaaacaaaaggaatactattattgattgaaaataaaatattac------ttatcc-tctgtaatcccagagcaaaag 4519016  T
Q  188 ctcctcagagaagagacat--ctctctctgcccaaaaccaataaggttcttaattaaataattatgaattccccccactgttgtggccaaatgaccttat 285  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||||||| | ||| | | | ||||||||||||||||| ||||||    
T  4519015 ctcctcagagaagagacatttctctctctgcccaaaaccaataaggttcctaattgaataattctcaatcctctctactgttgtggccaaatggccttat 4518916  T
Q  286 ttatacaaacaaagggcataaa 307  Q
    ||||||||||||||||||||||    
T  4518915 ttatacaaacaaagggcataaa 4518894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 44112866 - 44112795
Alignment:
Q  236 taattaaataattatgaattccccccactgttgtggccaaatgaccttatttatacaaacaaagggcataaa 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  44112866 taattaaataattatgaattccccccactattgtggccaaatggccttatttatacaaacaaagggcataaa 44112795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 44503246 - 44503206
Alignment:
Q  174 tcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  44503246 tcccagagcaaaagctcttcagagaagagacatctctctct 44503206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 3029966 - 3030012
Alignment:
Q  168 ctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||| |||| ||||||||||||||||| ||||||||| |||||||    
T  3029966 ctgtaaccccatagcaaaagctcctcagataagagacatttctctct 3030012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 19019667 - 19019713
Alignment:
Q  168 ctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||| |||| ||||||||| ||||||||||||||||| |||||||    
T  19019667 ctgtaaccccatagcaaaagcccctcagagaagagacatttctctct 19019713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 4251022 - 4250978
Alignment:
Q  179 gagcaaaagctcctcagagaagagacat--ctctctctgcccaaa 221  Q
    |||||||| |||||||||||||||||||  |||||||||||||||    
T  4251022 gagcaaaaactcctcagagaagagacattcctctctctgcccaaa 4250978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 20996216 - 20996175
Alignment:
Q  92 taggaacccaaattaaagagaaacaaaagaaatagtattata 133  Q
    ||||||||  ||| ||||||||||||||||||||||||||||    
T  20996216 taggaacctgaatcaaagagaaacaaaagaaatagtattata 20996175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 13046619 - 13046399
Alignment:
Q  18 cttcaaagtccatattccatccatctccgataacactggtttcct-tctcgtatccggtaggtcggaccaattgataggaacccaaattaaagagaaaca 116  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  13046619 cttcaaagtccatatttcatccatctctgataacactggtttcctctctcgaatctggtaggtcagaccaattgataggaacccgaattaaagagaaaca 13046520  T
Q  117 aaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat--ctctctct 214  Q
    || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |  || |||||    
T  13046519 aaggaaatagtattactgattgaaaagaaaatattacagaagattatccctctgtaattccagagcaaaggctcctcagagaagacacgttcctttctct 13046420  T
Q  215 gccc-aaaaccaataaggttc 234  Q
     ||| ||||||||||||||||    
T  13046419 acccaaaaaccaataaggttc 13046399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 87 - 290
Target Start/End: Complemental strand, 13047915 - 13047708
Alignment:
Q  87 attgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccagagcaaaa 186  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  13047915 attgataggaacccaaattaaagagaaacaaaggaaatagtattactgattgaaaagaaaatattacagaagattatccctctataatcccagagcaaag 13047816  T
Q  187 gctcctcagagaagagaca--tctctctctgccc-aaaaccaataaggttcttaattaaataattatgaattc-cccccactgttgtggccaaatgacct 282  Q
    |||||||||||||||||||  ||| ||||||||| |||||||||||||||| ||| | |||| || ||||| |   || || |||||||||||||| |||    
T  13047815 gctcctcagagaagagacacttctttctctgcccaaaaaccaataaggttcctaactgaatatttctgaatcctttcctacagttgtggccaaatggcct 13047716  T
Q  283 tatttata 290  Q
    | ||||||    
T  13047715 tgtttata 13047708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 30955157 - 30955221
Alignment:
Q  148 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    ||||||||||||| |||  ||||||| || ||||||||||||||||||||||||||||| |||||||    
T  30955157 tattacagaagataatc--tctgtaaccctagagcaaaagctcctcagagaagagacatttctctct 30955221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 30957810 - 30957874
Alignment:
Q  148 tattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    ||||||||||||| |||  ||||||| || ||||||||||||||||||||||||||||| |||||||    
T  30957810 tattacagaagataatc--tctgtaaccctagagcaaaagctcctcagagaagagacatttctctct 30957874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 36824631 - 36824595
Alignment:
Q  178 agagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||| |||||||||||||||||||||| |||||||    
T  36824631 agagcataagctcctcagagaagagacatttctctct 36824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 2754 - 2845
Alignment:
Q  88 ttgataggaacccaaattaaagagaaacaaaagaaatagtattatagattgaaaagaaaatattacagaagattatccctctgtaatcccag 179  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  2754 ttgataggaacccgaatcaaagagaaacataataaatagtattatagattgaatagaaaatattactgaagattatccctctgtaattccag 2845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 11711 - 11672
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11711 cccagagcaaaagctcctcagagaagagacatttctctct 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 20546 - 20507
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagacatctctctct 214  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  20546 cccagagcaaaagctcctcagagaagagacatttctctct 20507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 7105 - 7057
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagaca--tctctctctgcccaaa 221  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  7105 cccagagcaaaagctcctcagagaaaagacatttctctctctgcccaaa 7057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 9409 - 9361
Alignment:
Q  175 cccagagcaaaagctcctcagagaagagaca--tctctctctgcccaaa 221  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  9409 cccagagcaaaagctcctcagagaaaagacatttctctctctgcccaaa 9361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University