View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13945_low_14 (Length: 276)

Name: NF13945_low_14
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13945_low_14
NF13945_low_14
[»] chr8 (3 HSPs)
chr8 (1-204)||(33114781-33114984)
chr8 (222-259)||(33115004-33115041)
chr8 (5-51)||(32736493-32736539)
[»] chr7 (2 HSPs)
chr7 (18-130)||(17111889-17112001)
chr7 (27-119)||(45557418-45557510)
[»] chr2 (2 HSPs)
chr2 (5-60)||(45066473-45066528)
chr2 (64-130)||(38002781-38002847)
[»] chr6 (1 HSPs)
chr6 (71-120)||(3798997-3799046)
[»] chr4 (2 HSPs)
chr4 (9-49)||(5923908-5923948)
chr4 (5-57)||(44278969-44279021)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33114781 - 33114984
Alignment:
Q  1 aatgttttattttaaaattgattcgaacacacaaatttatagttcaattcatatttatatcagtgtatctaaacataaatcgttttacctacaattcaca 100  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||| |    
T  33114781 aatgttttattttagaattgattcgtacacacaaatttatagttcaacttatatttatgtcaatgtatctaaacataaatcgttttacctacaattcata 33114880  T
Q  101 tttaatcagaatcaattcaccaaaaatcaannnnnnngtcatagaatcaagcatacacttggtagaatattttgaaaagcactagaaaaattgggtataa 200  Q
    ||||||||||||||||||||| |||||||         |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33114881 tttaatcagaatcaattcaccgaaaatcattttttttatcatagaatcaagcgtacacttagtagaatattttgaaaagcacaagaaaaattgggtataa 33114980  T
Q  201 tgag 204  Q
    ||||    
T  33114981 tgag 33114984  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 33115004 - 33115041
Alignment:
Q  222 atctttaaaaggtgttagatattgccactatatatttt 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33115004 atctttaaaaggtgttagatattgccactatatatttt 33115041  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 32736493 - 32736539
Alignment:
Q  5 ttttattttaaaattgattcgaacacacaaatttatagttcaattca 51  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||    
T  32736493 ttttattttaaaattaatttttacacacaaatttatagttcaattca 32736539  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 17111889 - 17112001
Alignment:
Q  18 ttgattcgaacacacaaatttatagttcaattcatatttatatcagtgtatctaaacataaatcgttttacctacaattcacatttaatcagaatcaatt 117  Q
    |||||||  ||||||||||||||| ||| | |||| |||| || | || ||| ||||| |||||  |||||||||||||||  |||| ||| ||||||||    
T  17111889 ttgattcttacacacaaatttataattctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagtcaaaatcaatt 17111988  T
Q  118 caccaaaaatcaa 130  Q
    |||  ||||||||    
T  17111989 cactcaaaatcaa 17112001  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 45557418 - 45557510
Alignment:
Q  27 acacacaaatttatagttcaattcatatttatatcagtgtatctaaacataaatcgttttacctacaattcacatttaatcagaatcaattca 119  Q
    |||||||||||| ||| |||| |||  |||| || | |||||| ||||| |||||  ||||||| ||| |||| |||| ||||||||||||||    
T  45557418 acacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattca 45557510  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 45066473 - 45066528
Alignment:
Q  5 ttttattttaaaattgattcgaacacacaaatttatagttcaattcatatttatat 60  Q
    ||||||||||||||| |||   ||||||||||||||| |||||||||| |||||||    
T  45066473 ttttattttaaaatttattttcacacacaaatttataattcaattcatttttatat 45066528  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 38002781 - 38002847
Alignment:
Q  64 tgtatctaaacataaatcgttttacctacaattcacatttaatcagaatcaattcaccaaaaatcaa 130  Q
    |||||||||||||||||   |||| |||||||| || |||||||| |||||||||||  ||||||||    
T  38002781 tgtatctaaacataaatgactttatctacaattaacttttaatcaaaatcaattcactcaaaatcaa 38002847  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 3798997 - 3799046
Alignment:
Q  71 aaacataaatcgttttacctacaattcacatttaatcagaatcaattcac 120  Q
    ||||||||||| ||||| || ||| |||| ||||||||||||||||||||    
T  3798997 aaacataaatcattttatcttcaactcacttttaatcagaatcaattcac 3799046  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 5923948 - 5923908
Alignment:
Q  9 attttaaaattgattcgaacacacaaatttatagttcaatt 49  Q
    |||||||||||||||  |||| |||||||||||||||||||    
T  5923948 attttaaaattgattataacatacaaatttatagttcaatt 5923908  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 44279021 - 44278969
Alignment:
Q  5 ttttattttaaaattgattcgaacacacaaatttatagttcaattcatattta 57  Q
    |||||||||||||||||||| |||||| |||||| || ||||| |||| ||||    
T  44279021 ttttattttaaaattgattctaacacataaatttttaattcaaatcattttta 44278969  T

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