View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_15 (Length: 271)
Name: NF13945_low_15
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 56442870 - 56442989
Alignment:
| Q |
24 |
acggaaacgacaatgagcagcagcatctcactcctatcgctgctgctgccatcacccctcactccttgccacgttgcagatttacttggattggattgga |
123 |
Q |
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| T |
56442870 |
acggaaacgacaatgagcagcagcacctcactcctatcgctactgctgccatcacccctcactctttgccacgttgcaaatttac-----ttggattgga |
56442964 |
T |
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| Q |
124 |
ttggattcatgcattgcatacttca |
148 |
Q |
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||||||||||||||||||||||||| |
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| T |
56442965 |
ttggattcatgcattgcatacttca |
56442989 |
T |
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