View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13945_low_2 (Length: 564)

Name: NF13945_low_2
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13945_low_2
NF13945_low_2
[»] chr7 (36 HSPs)
chr7 (1-557)||(21647390-21647946)
chr7 (2-261)||(21710853-21711115)
chr7 (292-557)||(21786048-21786308)
chr7 (262-450)||(21682243-21682431)
chr7 (388-544)||(21788779-21788929)
chr7 (34-261)||(21624065-21624295)
chr7 (398-550)||(15714164-15714316)
chr7 (15-115)||(21786689-21786789)
chr7 (11-126)||(15714897-15715012)
chr7 (397-516)||(21629534-21629653)
chr7 (397-516)||(21652732-21652851)
chr7 (15-225)||(21773048-21773261)
chr7 (11-115)||(21697718-21697822)
chr7 (11-115)||(21789447-21789551)
chr7 (292-476)||(21726433-21726617)
chr7 (11-110)||(21657742-21657841)
chr7 (284-346)||(21710660-21710724)
chr7 (292-546)||(21714734-21714983)
chr7 (11-112)||(21717026-21717127)
chr7 (397-516)||(21764601-21764717)
chr7 (11-108)||(21630061-21630158)
chr7 (11-218)||(21727620-21727827)
chr7 (371-450)||(21709042-21709121)
chr7 (271-332)||(21623966-21624028)
chr7 (397-483)||(21705218-21705304)
chr7 (397-476)||(21657045-21657127)
chr7 (398-466)||(21807626-21807694)
chr7 (11-102)||(21666606-21666697)
chr7 (11-106)||(21682959-21683054)
chr7 (146-225)||(21726935-21727014)
chr7 (172-225)||(21682861-21682914)
chr7 (55-108)||(21705588-21705641)
chr7 (55-108)||(21765214-21765267)
chr7 (54-109)||(21793094-21793149)
chr7 (292-475)||(21772551-21772736)
chr7 (34-106)||(21727033-21727105)
[»] scaffold0182 (2 HSPs)
scaffold0182 (471-546)||(25909-25984)
scaffold0182 (11-108)||(26558-26655)


Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 21647946 - 21647390
Alignment:
Q  1 ctttgcaatcaaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647946 ctttgcaatcaaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctc 21647847  T
Q  101 ctgtatgtcatcatcgagatgctttcatttggactcttagaccatttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggattgg 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647846 ctgtatgtcataatcgagatgctttcatttggactcttagaccatttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggattgg 21647747  T
Q  201 atcagaacaataaaatttaaaaattgatttcctcttacaataatatatattacattttgcacctccactctgtaattataataatggtagcaaatttaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647746 atcagaacaataaaatttaaaaattgatttcctcttacaataatatatattacattttgcacctccactctgtaattataataatggtagcaaatttaga 21647647  T
Q  301 aacggaaaaaggaaaaatctgtttctaattttgtcgttaagttttaataagacaaaaatttagtaacaaattttacttttgtctctaatttctttcgtac 400  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647646 aacggaaaaaggcaaaatctgtttctaattttgtcgttaagttttaataagacaaaaatttagtaacaaattttacttttgtctctaatttctttcgtac 21647547  T
Q  401 cttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatggtattgatacactg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647546 cttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatgagtgggtgtctctgattgggactcacttggtaatggtattgatacactg 21647447  T
Q  501 tgttctccttctccttttccttttgaaaccatttccttctccttctttgatgatgtc 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21647446 tgttctccttctccttttccttttgaaaccatttccttctccttctttgatgatgtc 21647390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 21711115 - 21710853
Alignment:
Q  2 tttgcaatcaaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcc 101  Q
    ||||||| ||| |||||||| |||||||||| ||||||||||||| | ||| |||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  21711115 tttgcaaccaatcatccttcggagaaatccatgtctcttggactttgtgtcttgctagacttaagtcttattcctatttttcttagatcttttatgctcc 21711016  T
Q  102 tgtatgtcatcatcgagatgctttcatttggactctta---gaccatttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggatt 198  Q
    ||||||||||||||  || | || ||| |  |||||||     |||||||| ||||  ||||||||    | || |||||||||||| |  |||||||||    
T  21711015 tgtatgtcatcatcttgacgtttacatctaaactcttatttctccatttctttttgttagcttcattggttttattctatgttttaaacagaaatggatt 21710916  T
Q  199 ggatcagaacaataaaatttaaaaattgatttcctcttacaataatatatattacattttgca 261  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  21710915 ggattagaacaataaaatttaaaaatttatttcctcttacaataataaacattacattttgca 21710853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 292 - 557
Target Start/End: Complemental strand, 21786308 - 21786048
Alignment:
Q  292 aaatttagaaacggaaaaaggaaaaatc-tgtttctaattttgtcgttaagttttaataagacaaaaatttagtaacaaattttacttttgtctcta--a 388  Q
    |||||||  ||||||||||||||||||  | |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| |  |    
T  21786308 aaatttactaacggaaaaaggaaaaattatttttctagttttgtcgttaagttttaat--gacaaaaatttagtaacaaattttacttttttctcaaata 21786211  T
Q  389 tttctttcgtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatggt 488  Q
    ||||| | |||||||||   |||||| | |||||||||  |||||||||||||||| ||||| |  |||||||||| | || |||||| |      | ||    
T  21786210 tttctgttgtaccttggttgtagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatt------tcgt 21786117  T
Q  489 attgatacactgtgttctccttctccttttccttttgaaaccatttccttctccttctttgatgatgtc 557  Q
    ||||||| ||| ||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||    
T  21786116 attgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctgatggtgtc 21786048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 262 - 450
Target Start/End: Complemental strand, 21682431 - 21682243
Alignment:
Q  262 cctccactctgtaattataataatggtagcaaatttagaaacggaaaaaggaaaaatctgtttctaattttgtcgttaagttttaataagacaaaaattt 361  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| |     
T  21682431 cctccacttggtaattataataatcgtagcaaatttagaaacggaaaaaggcaaaatctgtttcaaattttgtcgtta-gttttaataagacaaaaaat- 21682334  T
Q  362 agtaacaaattttacttttgtctctaa--tttctttcgtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagat 450  Q
    || |||||| |||||||||||||||||  ||||| |  ||||||||   |||||  | |||||||||  |||||||||||||||| |||||    
T  21682333 agaaacaaactttacttttgtctctaagatttctattataccttgggtgtagatttaatgaggatgatattacgctgaagatcaagaagat 21682243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 388 - 544
Target Start/End: Complemental strand, 21788929 - 21788779
Alignment:
Q  388 atttctttcgtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatgg 487  Q
    |||||| | |||||||||||||||||| | ||||||||| ||||||||||||||||| ||||| ||||||||||||| | ||||||||| |      ||     
T  21788929 atttctattgtaccttggaattagatgtagtgaggatgattttacgctgaagatcaagaagatgagtgggtgtctctaactgggactcatt------tgt 21788836  T
Q  488 tattgatacactgtgttctccttctccttttccttttgaaaccatttccttctcctt 544  Q
    |||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||    
T  21788835 tattgatacactatgttctccttctccctttccttttggaaccatgtccttctcctt 21788779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 34 - 261
Target Start/End: Complemental strand, 21624295 - 21624065
Alignment:
Q  34 gtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtcatcatcgagatgctttcatttgga 133  Q
    ||||||||||||||| ||| |||||||   ||||||||||||| |  ||||||||| ||||||| ||||||||||| |||||  || | |||||| |  |    
T  21624295 gtctcttggacttcgtgtcttgcttgatccaagtcttattcctccagttcttagattttgtatgttcctgtatgtcgtcatcttgacgttttcatctaaa 21624196  T
Q  134 ctctt---agaccatttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggattggatcagaacaataaaatttaaaaattgattt 230  Q
    |||||   |  |||| ||||||||  ||||| ||    | ||||||||  |||||||| |||| |||||||||| ||||||||||||| |||||| ||||    
T  21624195 ctcttcatactccatatctctttgttagctttattgcttttaatctataatttaatcggaaatagattggatcataacaataaaatttcaaaatttattt 21624096  T
Q  231 cctcttacaataatatatattacattttgca 261  Q
    ||||||||||||||| |||||||||||||||    
T  21624095 cctcttacaataataaatattacattttgca 21624065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 550
Target Start/End: Complemental strand, 15714316 - 15714164
Alignment:
Q  398 taccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatggtattgataca 497  Q
    ||||||||||||||||| | |||||||   ||||||||| ||||||| ||||| ||||||||||||||| || |||||| || |||||||||||||||||    
T  15714316 taccttggaattagatgtaatgaggatatatttacgctgtagatcaagaagatgagtgggtgtctctgactgtgactcatttcgtaatggtattgataca 15714217  T
Q  498 ctgtgttctccttctccttttccttttgaaaccatttccttctccttctttga 550  Q
    || | || ||||||||||||||  |||| ||||   | |||||||||||||||    
T  15714216 ctatattgtccttctccttttctgtttggaaccccgttcttctccttctttga 15714164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 21786789 - 21786689
Alignment:
Q  15 atccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtcatcat 114  Q
    ||||||| |||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||   |||||||||||||||| ||| ||||||||||||    
T  21786789 atccttcggagaaatctatgtctcttggccttcgtgtcttgcttgacttaagtcttattcctacagctcttagatcttgtatgttccggtatgtcatcat 21786690  T
Q  115 c 115  Q
    |    
T  21786689 c 21786689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 15715012 - 15714897
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtca 110  Q
    ||||||||| |||||||||| |  ||| |||| ||| | ||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |    
T  15715012 aaccatcctgcagagaaatctatctctgttggcctttgtgtcttgcttgacttaagtcttattcctactgctcttagatcttgtatgctcctgtatgtaa 15714913  T
Q  111 tcatcgagatgctttc 126  Q
    ||| || |||| ||||    
T  15714912 tcagcgggatgttttc 15714897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 21629653 - 21629534
Alignment:
Q  397 gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatggtattgatac 496  Q
    |||||||||||||||||| | ||||||||| ||| || |||||||||| ||||| ||| ||| ||||| | || |||||| |||||| |||||||||| |    
T  21629653 gtaccttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatgc 21629554  T
Q  497 actgtgttctccttctcctt 516  Q
    ||| ||||||||||||||||    
T  21629553 actatgttctccttctcctt 21629534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 21652851 - 21652732
Alignment:
Q  397 gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatggtattgatac 496  Q
    |||||||||||||||||| | | ||||||| |||| || ||||||||| ||||| ||||||||||| ||| || |||||| ||||| | ||||| |||||    
T  21652851 gtaccttggaattagatgtagttaggatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggttaaggtatcgatac 21652752  T
Q  497 actgtgttctccttctcctt 516  Q
    ||| ||||||||||||||||    
T  21652751 actatgttctccttctcctt 21652732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 21773261 - 21773048
Alignment:
Q  15 atccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtcatcat 114  Q
    |||||||||||||||| | ||||||||| ||||  ||| ||||||||||||   |||||||||| | |||||||||||||||| ||| ||||||||||||    
T  21773261 atccttcagagaaatctatgtctcttggccttctcgtcttgcttgacttaaaatttattcctacatctcttagatcttgtatgttccggtatgtcatcat 21773162  T
Q  115 cgagatgctttcatttggac---tcttagaccatttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggattggatcagaacaat 211  Q
    |  ||   |||||| | |||   |||||  | | |||||||||  ||||||||  | |||||||||||||| || |  ||||||||||||||| |||| |    
T  21773161 cttgaccttttcatctcgactcttcttactcaaattctctttgttagcttcattgtttctaatctatgtttcaaacagaaatggattggatcataacatt 21773062  T
Q  212 aaaatttaaaaatt 225  Q
    ||||||| ||||||    
T  21773061 aaaatttcaaaatt 21773048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 21697822 - 21697718
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtca 110  Q
    |||||||||||  ||||||||| ||||||||| ||| | ||| ||||||||||||||||||||||||||  | |||||||||||||| |||| ||||| |    
T  21697822 aaccatccttcgcagaaatccatgtctcttgggctttgtgtcttgcttgacttaagtcttattcctactgcttttagatcttgtatgttcctatatgtaa 21697723  T
Q  111 tcatc 115  Q
    |||||    
T  21697722 tcatc 21697718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 21789551 - 21789447
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtca 110  Q
    ||||||||| |||||||||| | |||| |||| || || |||   |||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  21789551 aaccatcctgcagagaaatctacgtctgttggcctccgtgtcgcacttgacttaagtcttattccgactgctcttagatcttgtatgctcctgtatgtca 21789452  T
Q  111 tcatc 115  Q
    |||||    
T  21789451 tcatc 21789447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 476
Target Start/End: Complemental strand, 21726617 - 21726433
Alignment:
Q  292 aaatttagaaacggaaaaaggaaaaatctgtttctaattttgtcgttaagttttaataagacaaa-aatttagtaacaaattttacttttgtctcta--a 388  Q
    ||||||||||||||||||||||||||| | ||  |||||||| | ||||||||||  |||||||| |||||||| |||||||||| |||| ||||||  |    
T  21726617 aaatttagaaacggaaaaaggaaaaatattttattaattttg-cattaagtttta--aagacaaataatttagtgacaaattttaattttttctctaata 21726521  T
Q  389 tttctttcgtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactca 476  Q
    ||||| | |||||||||   |||||| | |||||||||  |||||| || |||||| ||||| |  |||||||| ||| |||||||||    
T  21726520 tttctgttgtaccttggttgtagatgtaatgaggatgatattacgccgacgatcaagaagatgaaagggtgtctttgactgggactca 21726433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 21657841 - 21657742
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtca 110  Q
    ||||||||| |  ||||||| | ||||||| | ||| | ||||||||||||||||||||||||||||||  | |||||||||||||| ||||||||||||    
T  21657841 aaccatcctccgcagaaatctatgtctcttagcctttgtgtcatgcttgacttaagtcttattcctactgcttttagatcttgtatgttcctgtatgtca 21657742  T

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Target: chr7; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 21710724 - 21710660
Alignment:
Q  284 atggtagcaaatttagaaacggaaaaagg--aaaaatctgtttctaattttgtcgttaagtttta 346  Q
    |||||||||||||||||||||| ||||||  |||||||||||||||||||||| |||||||||||    
T  21710724 atggtagcaaatttagaaacgggaaaaggcaaaaaatctgtttctaattttgttgttaagtttta 21710660  T

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Target: chr7; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 546
Target Start/End: Complemental strand, 21714983 - 21714734
Alignment:
Q  292 aaatttagaaacggaaaaaggaaaaatctgtttctaattttgtcgttaagttttaataagacaaa-aatttagtaacaaatttt-acttttgtctcta-- 387  Q
    ||||||||||||||||||||||||||| | ||  |||||||| | ||||||||||  |||||||| |||||||| ||||||||| | |||| ||||||      
T  21714983 aaatttagaaacggaaaaaggaaaaatattttattaattttg-cattaagtttta--aagacaaataatttagtgacaaattttaatttttttctctaat 21714887  T
Q  388 atttctttcgtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatgg 487  Q
    |||||| | |||||||||   |||||| | |||||||||  ||||| |||||||||| ||||| |  |||||||||| | || |||||| |      | |    
T  21714886 atttctgttgtaccttggttgtagatgtaatgaggatgatattacgttgaagatcaagaagatgaaagggtgtctctaactgtgactcatt------tcg 21714793  T
Q  488 tattgatacactgtgttctccttctccttttccttttgaaaccatttccttctccttct 546  Q
    |||||||| ||| || |||| |||| |||||| ||||| |||||| ||||||| |||||    
T  21714792 tattgataaactatgctctctttctgcttttctttttggaaccatgtccttcttcttct 21714734  T

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Target: chr7; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 21717127 - 21717026
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtca 110  Q
    ||||||||||| |||||||| | ||||||||| ||||| ||| |||||||||||||||||||||||| |  | ||||||||| |||| || ||||| |||    
T  21717127 aaccatccttcggagaaatctatgtctcttggccttcgtgtcttgcttgacttaagtcttattcctaatgcttttagatcttttatgttcgtgtatatca 21717028  T
Q  111 tc 112  Q
    ||    
T  21717027 tc 21717026  T

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Target: chr7; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 21764717 - 21764601
Alignment:
Q  397 gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggtaatggtattgatac 496  Q
    |||||||||| || |||| | ||||||||| |||| |||||||||| | ||||| ||||||||||||||| || |||||| ||| ||    |||||||||    
T  21764717 gtaccttggacttggatgtagtgaggatgactttatgctgaagatctagaagatgagtgggtgtctctgactgtgactcatttgtta---ttattgatac 21764621  T
Q  497 actgtgttctccttctcctt 516  Q
    ||| ||||||||||||||||    
T  21764620 actatgttctccttctcctt 21764601  T

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Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 21630158 - 21630061
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgt 108  Q
    ||||||||| |  ||||||| | ||||||||| ||| | |||||||||| ||||||||||||||||||   | |||||||||||||| ||||||||||    
T  21630158 aaccatcctccgcagaaatctatgtctcttggcctttgtgtcatgcttgtcttaagtcttattcctacagcttttagatcttgtatgttcctgtatgt 21630061  T

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Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 21727827 - 21727620
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtca 110  Q
    ||||||||||| |||||||| | ||||||||| |||||  || |||||||||||||||||||||||| |  | ||||||||| |||| ||  |||| |||    
T  21727827 aaccatccttcggagaaatctatgtctcttggccttcgtctcttgcttgacttaagtcttattcctaatgcttttagatcttttatgttcgagtatatca 21727728  T
Q  111 tcatcgagatgctttcatttggac---tcttagaccatttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggattggatcagaa 207  Q
    || | ||| |  |||||| || ||   |||||  ||||||||||||| |||||| ||  | | ||||||||||||||| | | || ||||||||||| ||    
T  21727727 tc-ttgagct--tttcatctgaacgcttcttactccatttctctttgtaagctttattgtttttaatctatgttttaaacaataacggattggatcaaaa 21727631  T
Q  208 caataaaattt 218  Q
     ||||||||||    
T  21727630 aaataaaattt 21727620  T

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Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 21709121 - 21709042
Alignment:
Q  371 ttttacttttgtctctaatttctttcgtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagat 450  Q
    |||||||||| |||||||||||| | |||||||||||||||| | | |||||| ||  ||| ||||||||||||||||||    
T  21709121 ttttacttttatctctaatttctattgtaccttggaattagaagtagtgaggaggatattatgctgaagatcaaaaagat 21709042  T

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Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 21624028 - 21623966
Alignment:
Q  271 tgtaattataataatg-gtagcaaatttagaaacggaaaaaggaaaaatctgtttctaatttt 332  Q
    |||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  21624028 tgtaattataataacgcgtagcaaatttagaaacagaaaaaggcaaaatctgtttctattttt 21623966  T

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Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 21705304 - 21705218
Alignment:
Q  397 gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactcacttggta 483  Q
    ||||||||||||||||||   ||||||||| |||||| |||||||||| |||||  |||||||| ||||| || |||||| ||||||    
T  21705304 gtaccttggaattagatgtggtgaggatgattttacgttgaagatcaagaagatgtgtgggtgtttctgactgtgactcatttggta 21705218  T

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Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 476
Target Start/End: Complemental strand, 21657127 - 21657045
Alignment:
Q  397 gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtggg---tgtctctgattgggactca 476  Q
    |||||||||||| ||||| | ||||||||||||| || |||||||||| ||||| ||||||   |||||||||||| ||||||    
T  21657127 gtaccttggaataagatgtagtgaggatgagtttccgttgaagatcaagaagatgagtgggtattgtctctgattgtgactca 21657045  T

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Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 21807626 - 21807694
Alignment:
Q  398 taccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctga 466  Q
    ||||||||||||||||| |  ||| |||||||||||||||| ||||| ||||| ||| |||||||||||    
T  21807626 taccttggaattagatgtagggagcatgagtttacgctgaacatcaagaagatgagttggtgtctctga 21807694  T

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Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 21666697 - 21666606
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcct 102  Q
    ||||||||| | |||||||| ||||||||  | | ||| ||| |||||||||||| |||||||||||||  | |||||||||||||| ||||    
T  21666697 aaccatcctgcggagaaatctaagtctctcagccatcgtgtcttgcttgacttaactcttattcctactgcttttagatcttgtatgttcct 21666606  T

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Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 21683054 - 21682959
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtat 106  Q
    ||||||||||| | |||||| | |||| |||| ||||| ||| |||||||||||||||||||||||| |  | ||||||||| |||| || |||||    
T  21683054 aaccatccttcggtgaaatctatgtcttttggccttcgtgtcttgcttgacttaagtcttattcctagtgcttttagatcttttatgttcatgtat 21682959  T

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Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 21727014 - 21726935
Alignment:
Q  146 ttctctttggaagcttcatattctctaatctatgttttaatcgaaaatggattggatcagaacaataaaatttaaaaatt 225  Q
    |||||||||  ||||||||| | | ||||||||||||||| |  ||||||||||||| | ||||||||||||| ||||||    
T  21727014 ttctctttgttagcttcatagtttttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatt 21726935  T

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Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 21682914 - 21682861
Alignment:
Q  172 aatctatgttttaatcgaaaatggattggatcagaacaataaaatttaaaaatt 225  Q
    |||||||||||||| |  ||||||||||||||| ||||||||||||| ||||||    
T  21682914 aatctatgttttaaacagaaatggattggatcataacaataaaattttaaaatt 21682861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 21705641 - 21705588
Alignment:
Q  55 gcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgt 108  Q
    ||||| |||||||||||||||||||  ||||||||||| ||||| |||||||||    
T  21705641 gcttgccttaagtcttattcctactgctcttagatcttctatgcccctgtatgt 21705588  T

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Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 21765267 - 21765214
Alignment:
Q  55 gcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgt 108  Q
    ||||| |||||||||||||||||||  ||||||||||| ||||| |||||||||    
T  21765267 gcttgtcttaagtcttattcctactgctcttagatcttctatgcccctgtatgt 21765214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 21793149 - 21793094
Alignment:
Q  54 tgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgtc 109  Q
    |||||||||||||||||||||||||   | |||||||||||||| |||||| ||||    
T  21793149 tgcttgacttaagtcttattcctacagcttttagatcttgtatgttcctgtgtgtc 21793094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 475
Target Start/End: Complemental strand, 21772736 - 21772551
Alignment:
Q  292 aaatttagaaacggaaaaa-ggaaaaatctgtttctaattttgtcgttaagttttaataagacaaa-aatttagtaacaaattttacttttgt-ctctaa 388  Q
    ||||||||||||||||||| |||||||| | ||  |||||||| | ||||||||||   ||||||| |||||||| |||||||||| |||| | ||||||    
T  21772736 aaatttagaaacggaaaaaaggaaaaatattttattaattttg-cattaagttttat--agacaaataatttagtgacaaattttaatttttttctctaa 21772640  T
Q  389 tttctttc--gtaccttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatcagtgggtgtctctgattgggactc 475  Q
    | | |||   |||||||||   |||||| | ||||||||   |||||||||||||||| ||||| |  |||||||||||| || |||||    
T  21772639 tatttttgttgtaccttggttgtagatgtaatgaggatggtattacgctgaagatcaagaagatgaaagggtgtctctgactgtgactc 21772551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 21727105 - 21727033
Alignment:
Q  34 gtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtat 106  Q
    ||||||||| |||||  || |||||||||||||||||||||||| |  | ||||||||| |||| || |||||    
T  21727105 gtctcttggccttcgtatcttgcttgacttaagtcttattcctagtgcttttagatcttttatgttcatgtat 21727033  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 25984 - 25909
Alignment:
Q  471 gactcacttggtaatggtattgatacactgtgttctccttctccttttccttttgaaaccatttccttctccttct 546  Q
    |||||| |||||||||||||||||||||| | |||||||||||| |||   |||| | |||| |||||||||||||    
T  25984 gactcatttggtaatggtattgatacactatattctccttctccgtttttctttggacccatgtccttctccttct 25909  T

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Target: scaffold0182; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 26655 - 26558
Alignment:
Q  11 aaccatccttcagagaaatccaagtctcttggacttcgagtcatgcttgacttaagtcttattcctacttttcttagatcttgtatgctcctgtatgt 108  Q
    ||||||||| |||||||||| | |||| ||||  || | || | ||||| |||||| ||||||||||||  ||||||||||| ||||| |||||||||    
T  26655 aaccatcctgcagagaaatctatgtctgttggctttggtgtaaagcttgccttaagacttattcctactgctcttagatcttctatgcccctgtatgt 26558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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