View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_20 (Length: 229)
Name: NF13945_low_20
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 26323622 - 26323423
Alignment:
| Q |
14 |
attattctcgtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttgcagggtggttcaac |
113 |
Q |
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| T |
26323622 |
attattctcgtctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttgcagggtggttcaac |
26323523 |
T |
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| Q |
114 |
accgacgcaaaactgtcaaaaatgtctagaattgtaaaggtggtgtgatccttggtttcttggttcaatttggccacggattggttcaataggttgttat |
213 |
Q |
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| T |
26323522 |
accgacgcaaaactgtcaaaaatgtctagaattgtaaaggtggtgtgatccttggtttcttggttcaatttggccacggattggttcaataggttgttat |
26323423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 26329720 - 26329536
Alignment:
| Q |
24 |
tctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttgcagggtggttcaacaccgacgcaa |
123 |
Q |
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| T |
26329720 |
tctacacttccacacttatactcactgcttactccgacgcaacatggtttcaaacgttccttaatgttatggctagaagggtgattcaacactgacttga |
26329621 |
T |
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| Q |
124 |
aactgtcaaaaatgtctagaattgtaaaggtggtgtgatccttggtttcttggttcaatttggccacggattggttcaataggtt |
208 |
Q |
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| T |
26329620 |
aactatcgaaaatgtctagaattgtgaatgtggtgtgatcattggtttcttgatttaactttgtaacagattggttcaataggtt |
26329536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 26337033 - 26336876
Alignment:
| Q |
24 |
tctacacttccacaattatactgactgcttactcccgcgcaacatggcttcaaatgatccttgatattatggcttgcagggtggttcaacaccgacgcaa |
123 |
Q |
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| T |
26337033 |
tctacacttccataagtatactcatcgcttactccgatgcaacatggcttcaaacgttccttaatgttatggcttgaagggtgattcaacaccgacctga |
26336934 |
T |
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| Q |
124 |
aactgtcaaaaatgtctagaattgtaaaggtggtgtgatccttggtttcttggttcaa |
181 |
Q |
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|||| || |||| | |||| ||||| || ||||||||||| ||||||||||||||||| |
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| T |
26336933 |
aactatcgaaaaggcctaggattgtgaatgtggtgtgatctttggtttcttggttcaa |
26336876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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