View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_3 (Length: 513)
Name: NF13945_low_3
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 33549254 - 33549749
Alignment:
| Q |
1 |
ttgcaaactgatattcaaaaaagaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaatcgaatttatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33549254 |
ttgcaaactgatattcaaaaaagaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttaaccaatcgaatttatcca |
33549353 |
T |
|
| Q |
101 |
gaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgttattaacttataatctatcatagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33549354 |
gaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgttattaacttataatctatcatagat |
33549453 |
T |
|
| Q |
201 |
tattattgtagtattgtttttacctaattatcttaatgcatgctttactattgttcatcaatcaattatttatatcaatattttgttattagaacctcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33549454 |
tattattgtagtattgtttttacctaattatcttaatgcatgctttactattgttcatcaatcaattatttatatcaatatttttttattagaacctctg |
33549553 |
T |
|
| Q |
301 |
caatatgcaataacataagttggtaaaaatctggccttttattccaaattctaggcccatttaacaactattattattaaatggtttgaaaatccaaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33549554 |
caatatgcaataacataagttggtaaaaatctggccttttattccaaattctaggcccatttaacaactattattattaaatggtttgaaaatccaaatc |
33549653 |
T |
|
| Q |
401 |
caaacactagctaacaaatgggtgtagaatctcaataaaaactcacctttatatgctgcatatagtcaagattcctgatatagattagattgatgc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33549654 |
caaacactagctaacaaatgggtgtagaatctcaataaaaactcacctttatatgctgcatatagtcaagattcctgatatagattagattgatgc |
33549749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26229755 - 26229981
Alignment:
| Q |
1 |
ttgcaaactgatattcaaaaaagaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaatcgaatttatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26229755 |
ttgcaaactgatattcaaaaaagaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaatcgaatttatcca |
26229854 |
T |
|
| Q |
101 |
gaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgttattaacttataatctatcatagat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26229855 |
gaaagccttctgaaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgttattaatttataatctatcatagat |
26229954 |
T |
|
| Q |
201 |
tattattgtagtattgtttttacctaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
26229955 |
tattattgtagtattgtttttacctaa |
26229981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 366 - 496
Target Start/End: Original strand, 26229993 - 26230123
Alignment:
| Q |
366 |
aactattattattaaatggtttgaaaatccaaatccaaacactagctaacaaatgggtgtagaatctcaataaaaactcacctttatatgctgcatatag |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26229993 |
aactattattattaaatggtttgaaaatccaaatccaaacactagctaacaaatgggtgtagaatctcaataaaaattcacctttatatgctgcatatag |
26230092 |
T |
|
| Q |
466 |
tcaagattcctgatatagattagattgatgc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
26230093 |
tcaagattcctgatatagattagattgatgc |
26230123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 134410 - 134794
Alignment:
| Q |
1 |
ttgcaaactgatattcaaaaaagaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaatcgaatttatcca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
134410 |
ttgcaaactgatattcaaaaaggaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaattgaatttatcca |
134509 |
T |
|
| Q |
101 |
gaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgttattaacttataatctatcatagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
134510 |
gaaagccttctggaatttaaatgtgactcaatcatggcaaaaaacattgtttccgttatgaaagtatctagacgttattaacttataatctatcatcgat |
134609 |
T |
|
| Q |
201 |
tattattgtagtattgtttttacctaattatcttaatgcatgctttactattgttcatcaatcaattatttatatcaatattttgttattagaacctcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134610 |
tattattgtagtattgtttttacctaattatcgtaatccatgctttactattgttcatcaatcaattatttatatcaatattttgttattagaacctcta |
134709 |
T |
|
| Q |
301 |
caatatgcaataacataagttggtaaaaatctggccttttat------tccaaattctaggcccatttaacaactattattatta |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
134710 |
caatatgcaataacataagttggtaaaaatctggccttttattcttaatccaaattctaggcccatttaacaactattattatta |
134794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 23961152 - 23960921
Alignment:
| Q |
1 |
ttgcaaactgatattcaaaaaagaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaatcgaatttatcca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23961152 |
ttgcaaactgatattcaaaaaggaaacgataaatcaaggaccaactgtcataattggacgtggatggaaagccttctgcttgaccaatcgaatttatcca |
23961053 |
T |
|
| Q |
101 |
gaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgttattaacttataatctatcatagat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
23961052 |
gaaagccttctgaaatttaaatgtgactcaatcatggccaaaaacatcgtttccattatgaaagtatctagacattattaacttataatctatcatcgat |
23960953 |
T |
|
| Q |
201 |
tattattgtagtattgtttttacctaattatc |
232 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
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|
| T |
23960952 |
tattattgtagtattgttcttacctaattatc |
23960921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 234 - 390
Target Start/End: Complemental strand, 23960825 - 23960663
Alignment:
| Q |
234 |
taatgcatgctttactattgttcatcaatcaattatttatatcaatattttgttattagaacctctacaatatgcaataacataagttggtaaaaatctg |
333 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23960825 |
taatccatgctttactattgttcatcaatcaactttttatatcaataaattgttattagaacctctacaatatgcaataacataagttggtaaaaatctg |
23960726 |
T |
|
| Q |
334 |
gcctt------ttattccaaattctaggcccatttaacaactattattattaaatggtttgaa |
390 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23960725 |
gccttttaatcttaatccaaattctaggcccatttaacaactattattattaaatggtgtgaa |
23960663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 385 - 496
Target Start/End: Complemental strand, 8336117 - 8336009
Alignment:
| Q |
385 |
tttgaaaatccaaatccaaacactagctaacaaatgggtgtagaatctcaataaaaactcacctttatatgctgcatatagtcaagattcctgatataga |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |
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|
| T |
8336117 |
tttgaaaatccaaatccaaacactagctaacaaatgggtgtagaatctcaataaaaactcacctttata---cgaatatagtcaagattcttgatataga |
8336021 |
T |
|
| Q |
485 |
ttagattgatgc |
496 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8336020 |
ttagattgatgc |
8336009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 10233312 - 10233193
Alignment:
| Q |
62 |
ggatggaaagccttctgcttgaccaatcgaatttatccagaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatga |
161 |
Q |
| |
|
||||||| ||| || |||||||||||||| || |||||| | ||| | || || ||||| || ||||| |||||||| |||||||| |||||||| | |
|
|
| T |
10233312 |
ggatggagagcattttgcttgaccaatcggatatatccaaatagcatacttgagtttaagtgcgactctatcatggctaaaaacattgtttccgtctcca |
10233213 |
T |
|
| Q |
162 |
aagtatctagacgttattaa |
181 |
Q |
| |
|
|| | ||||||||||||||| |
|
|
| T |
10233212 |
aattttctagacgttattaa |
10233193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 19777985 - 19778089
Alignment:
| Q |
77 |
tgcttgaccaatcgaatttatccagaaagccttctggaatttaaatgtgactcaatcatggccaaaaacatcgtttccgttatgaaagtatctagacgtt |
176 |
Q |
| |
|
|||||||| || || || |||||||| ||| | || |||||| ||||||||||||||||| |||||||| || |||||| ||||| || ||||||| |
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|
| T |
19777985 |
tgcttgacaaaccgtatatatccagatagcatactacaatttatgtgtgactcaatcatggctaaaaacattgtctccgtttgcaaagtttcgagacgtt |
19778084 |
T |
|
| Q |
177 |
attaa |
181 |
Q |
| |
|
||||| |
|
|
| T |
19778085 |
attaa |
19778089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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