View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_4 (Length: 488)
Name: NF13945_low_4
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Complemental strand, 34933111 - 34932656
Alignment:
| Q |
14 |
tcttctctgatttgggggttagggtttaaaccttatgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaatt |
113 |
Q |
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| T |
34933111 |
tcttctctgatttgggggttagggtttaaaccttgtgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaatt |
34933012 |
T |
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| Q |
114 |
aattagtacatatcatcatcatcatctaattaccatctaacaattctgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctat |
213 |
Q |
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| T |
34933011 |
aattagtacatatcatcatcatcatctaattaccatctaacaattttgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctat |
34932912 |
T |
|
| Q |
214 |
agcgcaaagatgagatactcagcgggatgcccatcgagatacgcacacggaataactcctgcgcacatgttcgacaacattcctgtgtttaaagccgagg |
313 |
Q |
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| T |
34932911 |
agtgcaaagatgagatactcagcgggatgcccatcgagatacacacacggaataactcctgcgcacatgttcgacaaccttcctgtgtttaaagccgagg |
34932812 |
T |
|
| Q |
314 |
caagcttttctggggcctgtagcaaatgctttcttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactct |
413 |
Q |
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| T |
34932811 |
caagcttttctggggcctgtagcaaatgctttcttttgattctagtttcacaattttagattctttgtgcgtattctagttctttaatattacttactct |
34932712 |
T |
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| Q |
414 |
ttaaacccacaggatcccgaactggtatcgcttcagcaatggcttgatgaaataga |
469 |
Q |
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| T |
34932711 |
ttaaacccacaggatctcgaactggcatcgcttcagaaaatgcttgataaaataga |
34932656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 38649236 - 38649189
Alignment:
| Q |
16 |
ttctctgatttgggggttagggtttaaaccttatgaattcgggatttt |
63 |
Q |
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||||| |||||||||| ||||||||||||| |||||||| |||||||| |
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| T |
38649236 |
ttctcggatttgggggctagggtttaaaccgtatgaattggggatttt |
38649189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 420
Target Start/End: Complemental strand, 38648688 - 38648614
Alignment:
| Q |
346 |
cttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactctttaaacc |
420 |
Q |
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||||| |||| |||||||| |||||||||||||||| | |||| | ||||||||||||| ||| ||| |||||| |
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| T |
38648688 |
cttttgattcaagtttcacaattttagtttctttgttcatatttgaattctttaatattaattaatctataaacc |
38648614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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