View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_6 (Length: 468)
Name: NF13945_low_6
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_6 |
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| [»] scaffold0479 (1 HSPs) |
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| [»] scaffold0210 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 99 - 420
Target Start/End: Original strand, 16067976 - 16068297
Alignment:
| Q |
99 |
ctctaatagtctaaaattttccttgacatgaaaccgcagaagatgaaaagaatatacgctaaccggccagtggtggattatgaatatgttgcgagatatg |
198 |
Q |
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| T |
16067976 |
ctctaatagtctaaaatttttcttgacatgaaaccgcagaagatgaaaagaatatacgctaaccggccagtggtggattatgaatatgttgcgagatatg |
16068075 |
T |
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| Q |
199 |
tgatgaaggtgaaggtaagttatattatggattctttcacacatatatgttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtct |
298 |
Q |
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| T |
16068076 |
tgatgaaggtgaaggtaagttatattatggattctttcacacatatatgttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtct |
16068175 |
T |
|
| Q |
299 |
aatagatctttttcatgcagactcgatttcaacatgctggtcatgtgtattcgtcgtttctagacatactgcaaatgtacagacagaaagaaaagaatct |
398 |
Q |
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| T |
16068176 |
aatagatctttttcatgcagactcgatttcaacatgctggtcatgtgtattcgtcgtttctagacatactgcaaatgtacagacaaaaagaaaagaatct |
16068275 |
T |
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| Q |
399 |
tgatgaagtcattcgtgaggta |
420 |
Q |
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|||||||||||||||||||||| |
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| T |
16068276 |
tgatgaagtcattcgtgaggta |
16068297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 404
Target Start/End: Original strand, 16071437 - 16071594
Alignment:
| Q |
244 |
tatgttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtctaatagatctttttcatgcagactcgatttcaacatgctggtcatg |
343 |
Q |
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| T |
16071437 |
tatgttttcaatgtagaattaat---cgatgaaatatttcagttttgacgagtctaatagatgtttttcatgcagactcgatttcaagatgctcgtcatg |
16071533 |
T |
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| Q |
344 |
tgtattcgtcgtttctagacatactgcaaatgtacagacagaaagaaaagaatcttgatga |
404 |
Q |
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| T |
16071534 |
tgtattctttgtttcaagacatgctgaaaatgtacatagaaagagaaaagagtcttgatga |
16071594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 16071255 - 16071388
Alignment:
| Q |
99 |
ctctaatagtctaaaattttccttgacatgaaaccgcagaagatgaaaagaatatacgctaaccggccagtggtggattatgaatatgttgcgagatatg |
198 |
Q |
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||||||||||||||| |||| |||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||| | ||||| | |
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| T |
16071255 |
ctctaatagtctaaattttttcttgacataaaataacagaagatgaaaagaacatatgctgaccggccagtggtggattatgaatatggtttgagattta |
16071354 |
T |
|
| Q |
199 |
tgatgaaggtgaaggtaagttatattatggattc |
232 |
Q |
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| T |
16071355 |
tgatgaaggtgaaggtaagttatattatggattc |
16071388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 115 - 342
Target Start/End: Original strand, 16078244 - 16078473
Alignment:
| Q |
115 |
ttttccttgacatgaaaccgcagaagatgaaaagaatatacgctaaccggccagtggtggattatgaatatgttgcgagatatgtgatgaaggtgaaggt |
214 |
Q |
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|||| |||||||||||||| || |||||||||||||| || ||| |||||||||||||||||||| ||| || | | |||||| |||||||||| |
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| T |
16078244 |
tttttcttgacatgaaaccacataagatgaaaagaatttatgctgaccggccagtggtggattatcggtatatttcaaattatgtgcgcgaggtgaaggt |
16078343 |
T |
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| Q |
215 |
aagttatattatggattcttt--cacacatatatgttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtctaatag----atctt |
308 |
Q |
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||||||||||||||||||||| |||| |||||| |||| ||||||||||| |||||| | ||||| |||||||||||| ||||||| || || |
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| T |
16078344 |
aagttatattatggattctttcccacatatatattttttgaatgtagaatt----atcaattatattttgtagttttgatgagcctaatagatatatttt |
16078439 |
T |
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| Q |
309 |
tttcatgcagactcgatttcaacatgctggtcat |
342 |
Q |
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||||||||||| ||||||||||||||||| |||| |
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| T |
16078440 |
tttcatgcagaatcgatttcaacatgctgatcat |
16078473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16067878 - 16067910
Alignment:
| Q |
1 |
tacaattgtgtttgaatcgttctcatcatcatg |
33 |
Q |
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| T |
16067878 |
tacaattgtgtttgaatcgttttcatcatcatg |
16067910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16071155 - 16071187
Alignment:
| Q |
1 |
tacaattgtgtttgaatcgttctcatcatcatg |
33 |
Q |
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| T |
16071155 |
tacaattgtgtttgaattgttctcatcatcatg |
16071187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 426
Target Start/End: Original strand, 3886770 - 3886917
Alignment:
| Q |
279 |
ttttcagttttgatgagtctaatagatctttttcatgcagactcgatttcaacatgctggtcatgtgtattcgtcgtttctagacatactgcaaatgtac |
378 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||| || ||||||| ||||||| || ||| | ||| |||||| |
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| T |
3886770 |
ttttgagttttgatgagtctaatagatcttttccatgcaggctcgatttgtacacgctcctcgtgtgtatcagtcgtttgtaaacacagtgctaatgtat |
3886869 |
T |
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| Q |
379 |
agacagaaagaaaagaatcttgatgaagtcattcgtgaggtacgtgtt |
426 |
Q |
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| | | | |||||| | ||||||||| |||||||| |||||||||||| |
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| T |
3886870 |
ataaacagagaaaacactcttgatgatgtcattcgagaggtacgtgtt |
3886917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 3900032 - 3900119
Alignment:
| Q |
237 |
acacatatatgttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtctaatagatctttttcatgcagactcgattt |
327 |
Q |
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| T |
3900032 |
acacatatatgttttcaatgttgaattaatta---agcaaagttttgagttttgatgagtctaatagatcttttccctgcaggctcgattt |
3900119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 346
Target Start/End: Original strand, 3860214 - 3860310
Alignment:
| Q |
247 |
gttttcaatgtagaattaataatcaatgaaatttttcagttttgatgagtctaatagatctttttcatgcagactcgatttcaacatgctggtcatgtgt |
346 |
Q |
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||||||||||| |||||||| ||| ||| |||| |||||||||||||||||||||| |||| | ||||| |||||||| | ||||| |||||||| |
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| T |
3860214 |
gttttcaatgttgaattaat---caaccaaaattttaagttttgatgagtctaatagatattttccctgcaggatcgatttctaaatgctcctcatgtgt |
3860310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 430
Target Start/End: Complemental strand, 13080 - 13014
Alignment:
| Q |
364 |
atactgcaaatgtacagacagaaagaaaagaatcttgatgaagtcattcgtgaggtacgtgttctat |
430 |
Q |
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|||||| | ||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
13080 |
atactgaatatgtacagacaaaaagaaaagagtcttgatgaagtcattcatgaggtacatgttctat |
13014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 12721062 - 12721128
Alignment:
| Q |
364 |
atactgcaaatgtacagacagaaagaaaagaatcttgatgaagtcattcgtgaggtacgtgttctat |
430 |
Q |
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|||||| | ||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
12721062 |
atactgaatatgtacagacaaaaagaaaagagtcttgatgaagtcattcatgaggtacatgttctat |
12721128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 430
Target Start/End: Complemental strand, 3606 - 3540
Alignment:
| Q |
364 |
atactgcaaatgtacagacagaaagaaaagaatcttgatgaagtcattcgtgaggtacgtgttctat |
430 |
Q |
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|||||| | ||||||||||| |||||||||| ||||||||| ||||||| |||||||| |||||||| |
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| T |
3606 |
atactgaatatgtacagacaaaaagaaaagagtcttgatgatgtcattcatgaggtacatgttctat |
3540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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