View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13945_low_8 (Length: 376)
Name: NF13945_low_8
Description: NF13945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13945_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 10100652 - 10100312
Alignment:
| Q |
12 |
aatacttagatatcacaaaatcactaatattttatttgcaaagtacttacagcatcagtcatgtaagctttatcaggatcatcgacaatttgagagagtg |
111 |
Q |
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| T |
10100652 |
aatacttagatatcacaaaatcactaatattt-atttgcaaagtacttacagcatcagtcatgtaagctttatcaggatcatcgacaatttgagagagtg |
10100554 |
T |
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| Q |
112 |
ttccatcataatctaagaacacaacaatctttttctctcttgcaatgttcatcactttttcaaaattttccaatgctgaagggtggttttcctttaagca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
10100553 |
ttccatcataatctaagaacacaacaatctttttctctcttgcaatgttcatcactttttcaaaattttccaatgcagaaggatggttttcctttaagca |
10100454 |
T |
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| Q |
212 |
aaagagttaatacatcagtggattttagatta-gaaaaaagcaaatattgtaaaagcaatatgaagaatgaacaatagtagatgtttacatacgataata |
310 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10100453 |
aaagagttaatacatcagtggattttagattataaaaaaaacaaatattgtaaaagcaatatgaagaatgaacaatagtagatgtttacatacgataatg |
10100354 |
T |
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| Q |
311 |
gatcattactcatgaatgcattattattatgatcacaaaatatgt |
355 |
Q |
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| T |
10100353 |
gatcattactcatgaatgc---attattatgatcacaaaatatgt |
10100312 |
T |
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