View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_2 (Length: 578)
Name: NF13946_high_2
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 195 - 435
Target Start/End: Complemental strand, 3331906 - 3331666
Alignment:
| Q |
195 |
ttcagcaacaacaacaacagcttttaggagattcaactgctccactttttcaagctatgcctcctcctaattctaatcctaatcttaatcctaatcttct |
294 |
Q |
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| T |
3331906 |
ttcagcaacaacaacaacagcttttaggagattcaactgctccactttttcaagctatgcatcctcctaattctaatcctaatcttaatcctaatcttct |
3331807 |
T |
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| Q |
295 |
cggtcagatgccttctgataatttctggccaaccgggcgttctccgtattgatcatgatgatattattgcaaagctatcattgttgggaacaaatgttgc |
394 |
Q |
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| T |
3331806 |
cggtcagatgccttctgataatttctggccaaccgggcgttctccgtattgatcatgatgacattattgcaaagctatcattgttgggaacaaatgttgc |
3331707 |
T |
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| Q |
395 |
aagaaggaaggaattggaagctagggaattcgatgatgagg |
435 |
Q |
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| T |
3331706 |
aagaaggaaggaattggaagctagggaattcgatgatgagg |
3331666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 3332092 - 3331950
Alignment:
| Q |
18 |
aagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgttgttattatgtctgcttcttttagtaacgctgcttatgagagact |
117 |
Q |
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| T |
3332092 |
aagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgttgttattatgtctgcttcttttagtaacgctgcttatgagagact |
3331993 |
T |
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| Q |
118 |
tcctttggaagaagatgatggttcttctattcaacaacttcaa |
160 |
Q |
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| T |
3331992 |
tcctttggaagatgatgatggttcttctattcaacaacttcaa |
3331950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 576
Target Start/End: Complemental strand, 3331594 - 3331525
Alignment:
| Q |
507 |
ggttctaggtgagttgatgtatgttgaatttgagactgtaattaaattgatgtatccttattagtattat |
576 |
Q |
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| T |
3331594 |
ggttctaggtgagttgatgtatgctgaatttgagactgtaattaaattgatgtatccttattattattat |
3331525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 16578959 - 16579014
Alignment:
| Q |
18 |
aagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgtt |
73 |
Q |
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| T |
16578959 |
aagggcaagttgttggtggaagtgttgttggacctttgattgctgctggacctgtt |
16579014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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