View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13946_high_26 (Length: 304)
Name: NF13946_high_26
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 41065217 - 41065499
Alignment:
| Q |
8 |
gaggaagttgtgtgaaagatcaactgcttcaagtttctcacagttagataattctgttggtatacttccatgaagttgattctgccaagcatagaagaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41065217 |
gaggaagttgtgtgaaagatcaactgcttcaagtttctcacagttagataattctgttggtatacttccatgaagttgattctgccaagcatagaagaga |
41065316 |
T |
|
| Q |
108 |
gtgagttccttcaagttccccataacacgtggaatctctccagtgaatttgttattatctaattcaagttgattcagcatggaaaaatttccaatatatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41065317 |
gtgagttccttcaagttccccataacacgtggaatctctccagtgaatttgttattatctaattcaagttgattcagcatggaaaaatttccaatatatg |
41065416 |
T |
|
| Q |
208 |
aaggtatttctccataaatgttattatcagacacaagaagttcctccaatgagagtagattactgagagacagaggtaactga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41065417 |
aaggtatttctccataaatgttattatcagacacaagaagttcctccaatgagagtagattactgagagacaaaggtaactga |
41065499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University