View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13946_high_27 (Length: 290)
Name: NF13946_high_27
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_27 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
| [»] scaffold1207 (1 HSPs) |
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|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11196781 - 11197070
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196781 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
11196880 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196881 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
11196980 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196981 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
11197070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 11156330 - 11156617
Alignment:
| Q |
3 |
ttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11156330 |
ttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtga |
11156429 |
T |
|
| Q |
103 |
gaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagc |
202 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156430 |
gaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagc |
11156529 |
T |
|
| Q |
203 |
tgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
11156530 |
tgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaag |
11156617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 11199946 - 11200220
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11199946 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgt |
11200045 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200046 |
gagaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
11200145 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
11200146 |
gctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgt |
11200220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11170628 - 11170917
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||||||||| |
|
|
| T |
11170628 |
ctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgt |
11170727 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
11170728 |
gagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgca |
11170827 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11170828 |
gctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag |
11170917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11209450 - 11209739
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| | ||||||||| |
|
|
| T |
11209450 |
ctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgt |
11209549 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||| |||||||||| ||||| |||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
11209550 |
gagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgca |
11209649 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11209650 |
gctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag |
11209739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 11161195 - 11161477
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11161195 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgt |
11161294 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161295 |
gagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
11161394 |
T |
|
| Q |
201 |
gctgcagaaggc--------tcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgt |
275 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||| |||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
11161395 |
tctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgt |
11161477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11276012 - 11276301
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||| |||||||| || |
|
|
| T |
11276012 |
ctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagt |
11276111 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||| ||| || ||||||||||||||| |
|
|
| T |
11276112 |
gagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgca |
11276211 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| || |||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11276212 |
gctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaag |
11276301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 11241491 - 11241267
Alignment:
| Q |
66 |
atcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgat |
165 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
11241491 |
atcgccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgat |
11241392 |
T |
|
| Q |
166 |
taaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagt |
265 |
Q |
| |
|
||| || |||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||| || ||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
11241391 |
taagagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaat |
11241292 |
T |
|
| Q |
266 |
ggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11241291 |
agactggcgttgtgagtcattaaag |
11241267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11133052 - 11133341
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| | || ||| |||| || || || ||||| |
|
|
| T |
11133052 |
ctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgt |
11133151 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
|||||| ||||| |||| |||||||| ||||||||||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
11133152 |
gagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgca |
11133251 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
||||| | |||||| ||||||||||||||||| ||||| || ||||||||||| ||||||| ||| | |||||||| |||||||||||| |
|
|
| T |
11133252 |
gctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaag |
11133341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 11314839 - 11314688
Alignment:
| Q |
5 |
cacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgaga |
104 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||| ||||| ||||| ||||||| ||||||| |
|
|
| T |
11314839 |
cacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgaga |
11314740 |
T |
|
| Q |
105 |
atggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctac |
156 |
Q |
| |
|
|| ||||| |||| |||||| ||||| ||||| || |||||||||| ||||| |
|
|
| T |
11314739 |
atagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 946 - 1232
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |||| ||||||||| | |
|
|
| T |
946 |
ctttcacaaaatggttcaccattgcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaattt |
1045 |
T |
|
| Q |
101 |
gagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgca |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||||||||||||||| |||| |||||| | ||||| |||||| ||||||||||||||| |
|
|
| T |
1046 |
gagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatg---tgatggttttgtgtcaaagccatatgcaattgca |
1142 |
T |
|
| Q |
201 |
gctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag |
290 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
1143 |
gctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaag |
1232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 29577594 - 29577531
Alignment:
| Q |
186 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataa |
249 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataa |
29577531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
186 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
260 |
Q |
| |
|
||||| ||||| || || |||| ||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 8382801 - 8382727
Alignment:
| Q |
186 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
260 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8382801 |
ccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 8602217 - 8602291
Alignment:
| Q |
186 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
260 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
8602217 |
ccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 13333389 - 13333307
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
260 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||| |||||||||||||| || | ||| |||||||||||| |||| |||||| |
|
|
| T |
13333389 |
tgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 13333561 - 13333503
Alignment:
| Q |
6 |
acaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgc |
64 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
13333561 |
acaaaatagttcaccattctgttatcgaagtcttctcccccaaggtgagtgtttcctgc |
13333503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 39985876 - 39985962
Alignment:
| Q |
173 |
tttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
259 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||| ||||||||||| |||||||| ||||| || || |||||||| || ||||| |
|
|
| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatc |
39985962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 10494307 - 10494226
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
259 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |||| ||||| |
|
|
| T |
10494307 |
tgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 8538306 - 8538353
Alignment:
| Q |
213 |
tcattgattattcgcataacattgaggccagcaataacacccgcatct |
260 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8538306 |
tcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 27830981 - 27830910
Alignment:
| Q |
5 |
cacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaac |
76 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| | ||| ||||||||||||| ||| ||| | |||||||| |
|
|
| T |
27830981 |
cacaaaatagttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttccagcagttgccttaac |
27830910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 3147335 - 3147397
Alignment:
| Q |
14 |
gttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaac |
76 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||| |||| |||||| || |||||||| |
|
|
| T |
3147335 |
gttcaccatcctattatcaaagtcctctcccccaaggtgggtgtttcctgcgatggccttaac |
3147397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 8585639 - 8585570
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
247 |
Q |
| |
|
||||||| ||||||||||| || || |||| || ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8585639 |
tgtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaat |
8585570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 8628767 - 8628836
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
247 |
Q |
| |
|
||||||| ||||||||||| || || |||| || ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8628767 |
tgtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaat |
8628836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 27830808 - 27830739
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
247 |
Q |
| |
|
||||||| ||||||||||| || || |||| |||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
27830808 |
tgtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaat |
27830739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12528562 - 12528622
Alignment:
| Q |
1 |
ctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcc |
61 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
12528562 |
ctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctcc |
12528622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 12528747 - 12528820
Alignment:
| Q |
186 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
259 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||| || || ||||||||||||||||| ||||| ||||| |
|
|
| T |
12528747 |
ccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatc |
12528820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 30775489 - 30775556
Alignment:
| Q |
180 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
247 |
Q |
| |
|
||||| ||||||||||| || ||||||| |||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
30775489 |
tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaat |
30775556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 9335822 - 9335754
Alignment:
| Q |
180 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaata |
248 |
Q |
| |
|
||||| ||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |
|
|
| T |
9335822 |
tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaata |
9335754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 16657450 - 16657384
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagc |
244 |
Q |
| |
|
||||||||||||||||||| || || |||| ||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
16657450 |
tgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagc |
16657384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 14703643 - 14703724
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
259 |
Q |
| |
|
||||||| ||||||||||| || || || | ||| ||||| |||| | ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14703643 |
tgtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc |
14703724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 34466726 - 34466656
Alignment:
| Q |
178 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaata |
248 |
Q |
| |
|
||||||| ||||||||||| || || |||| || |||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
34466726 |
tgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaata |
34466656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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