View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_28 (Length: 266)
Name: NF13946_high_28
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 42570840 - 42570592
Alignment:
| Q |
1 |
aaattataagttggaccggttatcttctttgaaacaggcacattcttttcagaacttagttatgtgctacttatccaagattttaatgcatgcctaaaac |
100 |
Q |
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| T |
42570840 |
aaattataagttgcaccggttatcttccttgaaacaggcacattcttttcagaacttagttttgtgctacttatccaagattttaatgcatgcctaaaac |
42570741 |
T |
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| Q |
101 |
agaactatcaaaatgctcctattaaaataatgaaccaatgctaaatgagtaacatagcataaacaaccagttaaaggtactaaactcaccataannnnnn |
200 |
Q |
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| T |
42570740 |
agaactatcgaaatgctcctattaaaataatgaaccaatgctaaatgagtaacatagcataaacaaccagttaaaggtactaaactcaccataattttct |
42570641 |
T |
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| Q |
201 |
nagacagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
249 |
Q |
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| T |
42570640 |
taggcagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
42570592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 42577952 - 42577778
Alignment:
| Q |
76 |
caagattttaatgcatgcctaaaacagaactatcaaaatgctcctattaaaataatgaaccaatgctaaa-tgagtaacatagcataaacaaccagttaa |
174 |
Q |
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| T |
42577952 |
caagattttaatgcatgcatcaaaaagaactatcgaaatgctccggtaaaaataatgaacaaatgctaaaatgagtagcataacataaacaaccagttaa |
42577853 |
T |
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| Q |
175 |
aggtactaaactcaccataannnnnnnagacagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
249 |
Q |
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| T |
42577852 |
atgaactaaactcaccataatctttttaggcagtgtatcgttcttttccttgttgaaatcatctaaagtaatttt |
42577778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 42573070 - 42573019
Alignment:
| Q |
143 |
aaatgagtaacatagcataaacaaccagttaaaggtactaaactcaccataa |
194 |
Q |
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| T |
42573070 |
aaatgagtagcatagcacaaacaaccagttcaaggaactaaactcaccataa |
42573019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 42578010 - 42577965
Alignment:
| Q |
32 |
aaacaggcacattcttttcagaacttagttatgtgctacttatcca |
77 |
Q |
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| T |
42578010 |
aaacaggcacattcttttcataacttagtttagtgctgcttatcca |
42577965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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