View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_29 (Length: 261)
Name: NF13946_high_29
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 48437496 - 48437731
Alignment:
| Q |
9 |
agcataggtaaacattagtaagatatataatatcctcgttttttcaggtcacatgacaaattgacactagaccctagacaaaccaggatctaagataaac |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48437496 |
agcaaaggtaaacattagtaagatatataatatcctcgttttttcaggtcacatgacaaattgacactagaccctagacaaaccaggatctaagataaac |
48437595 |
T |
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| Q |
109 |
aaaagacgcggttacacatagnnnnnnnnatctcagtcattagtttaaatttcacaaatacaaaattagtttaaaacaatctaaactgttaatttgatga |
208 |
Q |
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| T |
48437596 |
aaaagacgcggttacacatag-tttttttatctcagtcattagtttaaatttcacaaatacaaaattagtttaaaacaatataaactgttaatttgatga |
48437694 |
T |
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| Q |
209 |
gatagaaaactacctggcgagaaacagccaatgaacg |
245 |
Q |
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| T |
48437695 |
gatagaaaactacctggcgagaaacagccaatgaacg |
48437731 |
T |
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