View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13946_high_31 (Length: 252)
Name: NF13946_high_31
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 49245524 - 49245437
Alignment:
| Q |
13 |
aatatctatatggtccattaaataatgattggaacaatgaagggcctttcttcttcgcttaaccaactttgatgcattcattctttag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49245524 |
aatatctatatggtccattcaataatgattggaacaatgaagggcctttcttcttcgcttaaccaactttgatgcattcattctttag |
49245437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 49245379 - 49245332
Alignment:
| Q |
161 |
tttcaacaccaattaatttctttgctcataactatcaatatgcataca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49245379 |
tttcaacaccaattaatttctttgctcataactatcaatatgcataca |
49245332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University