View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_32 (Length: 237)
Name: NF13946_high_32
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49245214 - 49244994
Alignment:
| Q |
1 |
aatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctctcttaatcttctcaataacagcaccattttgaaccaaagc |
100 |
Q |
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| T |
49245214 |
aatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctctcttaatcttctcaataacagcaccattttgaaccaaagc |
49245115 |
T |
|
| Q |
101 |
agtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaaaataacagtaatcaaa |
200 |
Q |
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| T |
49245114 |
agtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaaaataacagtaatcaac |
49245015 |
T |
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| Q |
201 |
ccaggtttagccacagattca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
49245014 |
ccaggtttagccacagattca |
49244994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 49059504 - 49059376
Alignment:
| Q |
85 |
cattttgaaccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaa |
184 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||||||| ||| | || || | |||||| |
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| T |
49059504 |
cattttgaaccaatgcagtgattgccaagatcaaatttccatcattaacagagacatttgccactaaaatctcagcttgattgtccacaaatatcttcaa |
49059405 |
T |
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| Q |
185 |
aataacagtaatcaaaccaggtttagcca |
213 |
Q |
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||| ||||| |||||||||| |||||| |
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| T |
49059404 |
aatcgcagtagccaaaccaggtctagcca |
49059376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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