View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_34 (Length: 229)
Name: NF13946_high_34
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 1089837 - 1090030
Alignment:
| Q |
19 |
ggtattgcaattacttcaatcaaattctctaggtttaaaaattccacaaaataacttgatgtacttgggggattattccttcaacaactgaatgaataat |
118 |
Q |
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| T |
1089837 |
ggtattgcaattacttcaatcaaattctctaggtttacaaattccacaaaataacttgatgtacttgggggattattccttcaacaactgaatgaataat |
1089936 |
T |
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| Q |
119 |
ttctcttttatgggcataaaagtggaactcatctt-ctgacagagttgccccttcaatcatacacttttatcgtttgtttaacatcgtctacat |
211 |
Q |
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| T |
1089937 |
ttctcttttatgggcataaaagaggaactcatcttcctgacagagttgccccatcaatcatacacttttatcgtttgtttaacatcctctacat |
1090030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 1597570 - 1597681
Alignment:
| Q |
19 |
ggtattgcaattacttcaatcaaattctctaggtttaaaaattccaca--aaataacttgatgtacttgggggattattccttcaacaactgaatgaata |
116 |
Q |
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| T |
1597570 |
ggtattgcaattgcttcaatcaaaatctcaaggtttacaatttcaacaagaaaaatcttgatgtactt-ggtgattattactttaataactgaatgaata |
1597668 |
T |
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| Q |
117 |
atttctcttttat |
129 |
Q |
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| T |
1597669 |
ttttcttttttat |
1597681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1540355 - 1540305
Alignment:
| Q |
19 |
ggtattgcaattacttcaatcaaattctctaggtttaaaaattccacaaaa |
69 |
Q |
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| T |
1540355 |
ggtattgcaattgcttcaatcaaaatctcaaggtttacaaattcaacaaaa |
1540305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1563530 - 1563480
Alignment:
| Q |
19 |
ggtattgcaattacttcaatcaaattctctaggtttaaaaattccacaaaa |
69 |
Q |
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|||||||||||| ||||||||||| |||| ||||||| |||||| |||||| |
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| T |
1563530 |
ggtattgcaattgcttcaatcaaaatctcaaggtttacaaattcaacaaaa |
1563480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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