View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_36 (Length: 226)
Name: NF13946_high_36
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_36 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 48527164 - 48526947
Alignment:
| Q |
9 |
atatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaa |
108 |
Q |
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| T |
48527164 |
atatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaa |
48527065 |
T |
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| Q |
109 |
gatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggggacccagaggaagatcatcattgtt |
208 |
Q |
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| T |
48527064 |
gatgcaatcaaatggggaacagattattttttaaaagctagttctagaagaaacaaattatatgttgaggtaggggacccagaggaagatcatcattgtt |
48526965 |
T |
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| Q |
209 |
gggctccaccagaaaaaa |
226 |
Q |
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| T |
48526964 |
gggctccaccagaaaaaa |
48526947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 7222549 - 7222334
Alignment:
| Q |
9 |
atatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaa |
108 |
Q |
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| T |
7222549 |
atatgggctaccaatggcattcacagttactacattatcatgggcagcaatattttataaaacagaatttgaagcaactaatgaaatgggaaatattcaa |
7222450 |
T |
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| Q |
109 |
gatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggggacccagaggaagatcatcattgtt |
208 |
Q |
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| T |
7222449 |
aatgccattagatggggtactgattattttctgaaaactagttcccaaagaaatagattatatgtagaggtaggggacccagttgatgatcaccattgtt |
7222350 |
T |
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| Q |
209 |
gggctccaccagaaaa |
224 |
Q |
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| T |
7222349 |
gggcaccaccggaaaa |
7222334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 50304083 - 50304211
Alignment:
| Q |
51 |
ggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagt |
150 |
Q |
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| T |
50304083 |
ggctgcaatattttacaaaactgaatttgaagcaacaaatgaaataggaaatattcaaaatgttattaaatggggtacatattattttctgaaaactagc |
50304182 |
T |
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| Q |
151 |
tgtagaagaaacaaattatatgttgaggt |
179 |
Q |
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| T |
50304183 |
tccggaagaaatagattatatgttaaggt |
50304211 |
T |
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