View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13946_high_39 (Length: 213)

Name: NF13946_high_39
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13946_high_39
NF13946_high_39
[»] chr7 (20 HSPs)
chr7 (13-195)||(43118703-43118885)
chr7 (85-195)||(34993162-34993272)
chr7 (108-195)||(16979934-16980021)
chr7 (86-195)||(23142686-23142796)
chr7 (102-195)||(25530579-25530672)
chr7 (129-195)||(8896632-8896698)
chr7 (86-195)||(12810181-12810289)
chr7 (108-193)||(30027956-30028041)
chr7 (141-195)||(18221020-18221074)
chr7 (119-193)||(41064341-41064415)
chr7 (106-195)||(37928290-37928379)
chr7 (119-195)||(16685734-16685812)
chr7 (119-195)||(17659970-17660048)
chr7 (129-186)||(8746149-8746206)
chr7 (107-163)||(1521267-1521323)
chr7 (119-195)||(31487744-31487820)
chr7 (133-188)||(23317839-23317894)
chr7 (85-195)||(31850782-31850893)
chr7 (141-195)||(23080659-23080713)
chr7 (129-186)||(26241648-26241705)
[»] chr3 (20 HSPs)
chr3 (93-195)||(49261757-49261859)
chr3 (86-195)||(48338783-48338892)
chr3 (129-195)||(29032425-29032491)
chr3 (113-195)||(50958857-50958939)
chr3 (86-195)||(4128727-4128836)
chr3 (107-195)||(54801364-54801452)
chr3 (85-195)||(38359016-38359126)
chr3 (127-195)||(4020109-4020177)
chr3 (119-195)||(31494039-31494115)
chr3 (87-195)||(34145939-34146046)
chr3 (119-174)||(53818829-53818884)
chr3 (119-195)||(6785828-6785905)
chr3 (119-195)||(26613099-26613176)
chr3 (108-188)||(635746-635826)
chr3 (108-184)||(11676781-11676857)
chr3 (85-188)||(42437757-42437858)
chr3 (119-195)||(55446736-55446811)
chr3 (133-187)||(37043028-37043082)
chr3 (119-171)||(12109653-12109705)
chr3 (119-195)||(25319466-25319542)
[»] chr8 (19 HSPs)
chr8 (94-195)||(600350-600451)
chr8 (107-195)||(44648972-44649060)
chr8 (124-188)||(3137408-3137472)
chr8 (119-195)||(10029165-10029241)
chr8 (129-178)||(547075-547124)
chr8 (125-178)||(23425318-23425371)
chr8 (86-195)||(17720212-17720322)
chr8 (107-195)||(27506980-27507068)
chr8 (95-170)||(23725684-23725759)
chr8 (84-186)||(34678250-34678351)
chr8 (119-188)||(35901457-35901526)
chr8 (108-195)||(40489842-40489929)
chr8 (86-184)||(43917557-43917655)
chr8 (129-178)||(6270200-6270249)
chr8 (111-195)||(1342317-1342400)
chr8 (83-195)||(11150890-11151001)
chr8 (125-159)||(42361584-42361618)
chr8 (150-195)||(3347545-3347590)
chr8 (129-177)||(10652793-10652841)
[»] chr2 (20 HSPs)
chr2 (86-188)||(41436295-41436397)
chr2 (86-195)||(40574177-40574286)
chr2 (119-195)||(18717853-18717929)
chr2 (119-195)||(4978786-4978862)
chr2 (119-195)||(4996694-4996770)
chr2 (95-195)||(6315866-6315966)
chr2 (119-195)||(13738429-13738505)
chr2 (127-195)||(27896474-27896542)
chr2 (85-195)||(8580481-8580591)
chr2 (125-195)||(40346717-40346787)
chr2 (106-163)||(42251597-42251654)
chr2 (111-183)||(6462637-6462709)
chr2 (119-195)||(38024215-38024290)
chr2 (125-195)||(23453353-23453424)
chr2 (119-178)||(28331305-28331364)
chr2 (127-178)||(43131810-43131861)
chr2 (106-171)||(13717168-13717233)
chr2 (119-195)||(18857437-18857513)
chr2 (149-195)||(4186405-4186451)
chr2 (95-195)||(4557550-4557651)
[»] chr4 (24 HSPs)
chr4 (113-195)||(12094955-12095037)
chr4 (129-195)||(19480550-19480616)
chr4 (109-194)||(2824851-2824936)
chr4 (84-195)||(27284040-27284151)
chr4 (108-195)||(28740277-28740364)
chr4 (81-195)||(20775037-20775151)
chr4 (81-195)||(39810737-39810850)
chr4 (84-183)||(48419041-48419140)
chr4 (85-195)||(31991492-31991602)
chr4 (108-178)||(52837318-52837388)
chr4 (83-152)||(36506747-36506816)
chr4 (130-186)||(2565454-2565510)
chr4 (135-186)||(31089827-31089878)
chr4 (130-195)||(44190235-44190298)
chr4 (146-195)||(31861462-31861511)
chr4 (86-178)||(28176746-28176838)
chr4 (128-171)||(22019615-22019658)
chr4 (135-194)||(44639887-44639946)
chr4 (138-195)||(7437863-7437920)
chr4 (114-194)||(13967842-13967923)
chr4 (146-178)||(3708722-3708754)
chr4 (119-195)||(12076462-12076538)
chr4 (119-195)||(27133552-27133628)
chr4 (129-185)||(36752696-36752752)
[»] chr1 (18 HSPs)
chr1 (109-195)||(26829485-26829571)
chr1 (93-183)||(34347556-34347646)
chr1 (93-195)||(46295905-46296007)
chr1 (106-195)||(33148165-33148254)
chr1 (83-195)||(13969133-13969245)
chr1 (108-195)||(8001781-8001868)
chr1 (129-195)||(27688492-27688558)
chr1 (106-195)||(17169304-17169393)
chr1 (129-195)||(10226496-10226562)
chr1 (125-195)||(38597489-38597559)
chr1 (129-195)||(11449073-11449139)
chr1 (110-151)||(17644831-17644872)
chr1 (110-167)||(30941531-30941588)
chr1 (86-195)||(32187024-32187132)
chr1 (128-188)||(52429639-52429700)
chr1 (129-185)||(39238844-39238900)
chr1 (129-188)||(49731203-49731262)
chr1 (75-195)||(8279695-8279815)
[»] chr6 (15 HSPs)
chr6 (119-195)||(5611163-5611239)
chr6 (86-171)||(31223165-31223251)
chr6 (119-195)||(19659648-19659724)
chr6 (114-188)||(8636785-8636859)
chr6 (108-194)||(32134038-32134124)
chr6 (127-184)||(10008204-10008261)
chr6 (128-195)||(18493255-18493322)
chr6 (127-178)||(27082322-27082373)
chr6 (119-195)||(17835010-17835086)
chr6 (129-188)||(2911508-2911567)
chr6 (129-183)||(12677833-12677887)
chr6 (86-188)||(30929465-30929568)
chr6 (119-195)||(2470354-2470430)
chr6 (119-195)||(17345876-17345952)
chr6 (129-196)||(19320304-19320372)
[»] chr5 (11 HSPs)
chr5 (119-195)||(30840632-30840707)
chr5 (106-195)||(27544579-27544668)
chr5 (86-178)||(22293954-22294046)
chr5 (108-195)||(11815903-11815990)
chr5 (109-195)||(30293857-30293943)
chr5 (137-195)||(14044714-14044772)
chr5 (114-195)||(6646286-6646367)
chr5 (86-174)||(7609595-7609682)
chr5 (125-195)||(1056818-1056888)
chr5 (137-195)||(36482072-36482130)
chr5 (86-174)||(7319228-7319316)
[»] scaffold0039 (1 HSPs)
scaffold0039 (128-195)||(30021-30088)
[»] scaffold0204 (1 HSPs)
scaffold0204 (81-195)||(15400-15514)
[»] scaffold0299 (1 HSPs)
scaffold0299 (109-178)||(18067-18137)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 43118703 - 43118885
Alignment:
Q  13 gagtagcaaagggagagagaagagccactttgttaattttcttcatactccttggcgataatcatttctttatggagaaggttaaccagtgcttcaaggg 112  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43118703 gagtaccaaagggagagagaagagccactttgtaaattttcttcatactccttggcgataatcatttctttatggagaaggttaacaagtgcttcaaggg 43118802  T
Q  113 caatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  43118803 caatgcttaatcatccaaaacaagtaagttttaatgaaaaaattgcgtaattactatttgatcaaatgtaacatctcatattt 43118885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 34993272 - 34993162
Alignment:
Q  85 tggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    ||||||| ||||||||||||   ||| |||||| |||| |||| ||| |||||||||||| ||||||||||||||||||||||| || |||||| |||||    
T  34993272 tggagaatgttaaccagtgccctaagagcaatgattaagcatctaaatcaagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaac 34993173  T
Q  185 atctcatattt 195  Q
    |||| ||||||    
T  34993172 atcttatattt 34993162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 16979934 - 16980021
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||| || |||| |||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  16979934 aagggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattt 16980021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 23142796 - 23142686
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaa-gttgtgtaattattacttgatcaaatgtaac 184  Q
    |||||| |||||| ||||  ||||| ||| || |||| ||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||  ||||    
T  23142796 ggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataac 23142697  T
Q  185 atctcatattt 195  Q
    |||| ||||||    
T  23142696 atcttatattt 23142686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 25530672 - 25530579
Alignment:
Q  102 tgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||| | |||| || | |||||||||||| |||||||| |||||||| ||||||||| ||||||| |||||||||||||| | ||||||    
T  25530672 tgcttcaagagtaatggttcagcatccaaaacaaataagtttttatgaaaaaattgtgtaatcattactttatcaaatgtaacattttatattt 25530579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 8896698 - 8896632
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||||||| |||||||| ||||||||| ||||| |||||||| ||||||||| ||||||    
T  8896698 aaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatattt 8896632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 12810289 - 12810181
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||| ||||||| ||| | ||||||||||| |||| |||| |||||||| | | ||| ||||||||||||||||||||||||||  ||||| |||| |    
T  12810289 ggagaatgttaaccggtg-tccaagggcaatggttaaacatctaaaacaagcatgctttcatgaaaaagttgtgtaattattactttgtcaaaagtaata 12810191  T
Q  186 tctcatattt 195  Q
    ||| ||||||    
T  12810190 tcttatattt 12810181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 30027956 - 30028041
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatat 193  Q
    ||||| |||| |||| |||||| |||||||||| ||| ||||||||||||||| || ||||||| |||||| ||||||||| ||||    
T  30027956 aagggtaatggttaaacatccataacaagtaagatttcatgaaaaagttgtgtgatcattactttatcaaaagtaacatcttatat 30028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 18221074 - 18221020
Alignment:
Q  141 ttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  18221074 tttttatgaaaaagttgtataattattacttaatcaaatgtaacatcttatattt 18221020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 41064415 - 41064341
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatat 193  Q
    |||| ||||||||| || ||||||||||| |||||||||| |||  |||||||||||||| ||||||||| ||||    
T  41064415 ttaagcatccaaaataaataagttttaataaaaaagttgtctaaccattacttgatcaaaagtaacatcttatat 41064341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 37928290 - 37928379
Alignment:
Q  106 tcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||| || || |||| ||||||||| ||||||||||| || ||||||||||||||| ||||||| ||||||  |||||| | ||||||    
T  37928290 tcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattt 37928379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 16685734 - 16685812
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatg-aaaaagttgtgtaattattacttgatcaaa-tgtaacatctcatattt 195  Q
    |||| ||||||||| ||||||||||| ||  ||||||||||||||| ||||||||||||||  ||||||||| ||||||    
T  16685734 ttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatattt 16685812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 17659970 - 17660048
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatg-aaaaagttgtgtaattattacttgatcaaa-tgtaacatctcatattt 195  Q
    |||| ||||||||| ||||||||||| ||  ||||||||||||||| ||||||||||||||  ||||||||| ||||||    
T  17659970 ttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatattt 17660048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 8746149 - 8746206
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacat 186  Q
    |||| ||||||||||| ||||||||||||| |||| |||| ||||||||| |||||||    
T  8746149 aaaataagtaagtttttatgaaaaagttgtataatcattatttgatcaaaagtaacat 8746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 1521323 - 1521267
Alignment:
Q  107 caagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaat 163  Q
    ||||||||||| |||| ||||||||||||||||||||  |||||||| ||| |||||    
T  1521323 caagggcaatggttaaacatccaaaacaagtaagtttccatgaaaaaattgcgtaat 1521267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 31487820 - 31487744
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||| || |||||||| | |||||| ||||||||||||||||| || |||  |||||||| ||||||    
T  31487820 ttaaacatccaaaataaataagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatattt 31487744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 23317894 - 23317839
Alignment:
Q  133 caagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    |||||||||||| || ||||||| ||||||| || ||||||||||| |||||||||    
T  23317894 caagtaagttttcataaaaaagtggtgtaatcataacttgatcaaaagtaacatct 23317839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 31850893 - 31850782
Alignment:
Q  85 tggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaag-ttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    ||||||| |||||  |||||| ||| || |||| |||| |||| |||||||||||| |||| |||||||| || |||||| |||| || || ||| ||||    
T  31850893 tggagaatgttaattagtgctccaaaggtaatggttaagcatctaaaacaagtaagttttttatgaaaaaattatgtaatcattattttattaaaagtaa 31850794  T
Q  184 catctcatattt 195  Q
    ||||| ||||||    
T  31850793 catcttatattt 31850782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 23080713 - 23080659
Alignment:
Q  141 ttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||||||| || |||||| |||||||||||||| ||||||||| ||||||    
T  23080713 tttttatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatattt 23080659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 26241705 - 26241648
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacat 186  Q
    ||||||||||| |||| |  ||||||| || ||||||||| |||||||||||||||||    
T  26241705 aaaacaagtaactttttaataaaaagtagtataattattatttgatcaaatgtaacat 26241648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 49261757 - 49261859
Alignment:
Q  93 gttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcata 192  Q
    ||||||||||||| |||| |||||| |||| |||||||||||||||  |||| |||||||| ||||||||||||||||  |||||| ||||||||| |||    
T  49261757 gttaaccagtgctccaagagcaatggttaagcatccaaaacaagtacattttcatgaaaaaattgtgtaattattactctatcaaaagtaacatcttata 49261856  T
Q  193 ttt 195  Q
    |||    
T  49261857 ttt 49261859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 48338783 - 48338892
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||| | |||| ||||||  |||||||||| |||| ||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||  |||||    
T  48338783 ggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataaca 48338882  T
Q  186 tctcatattt 195  Q
    ||| ||||||    
T  48338883 tcttatattt 48338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 29032425 - 29032491
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  29032425 aaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattt 29032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 50958857 - 50958939
Alignment:
Q  113 caatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||  |||||| | ||||||    
T  50958857 caatgcttaagcatccaaaacaagtaagtttttatgaaaaaattgtgtaatcatttcttgatcaaaaataacatgttatattt 50958939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 4128836 - 4128727
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||| | ||||| ||||  ||||||||||| |||| ||||||||||||||||||||| |||||||  ||||||||| ||||||| ||||||  ||| |    
T  4128836 ggagaatgctaaccggtgccccaagggcaatggttaagcatccaaaacaagtaagttttcatgaaaatattgtgtaatcattactttatcaaaaataata 4128737  T
Q  186 tctcatattt 195  Q
    ||| ||||||    
T  4128736 tcttatattt 4128727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 54801452 - 54801364
Alignment:
Q  107 caagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||||  |||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||| | |||| ||||||||| ||||||    
T  54801452 caagggcaatagttaagcatacaaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattt 54801364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 38359016 - 38359126
Alignment:
Q  85 tggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    ||||||| |||||| | ||| |||||||||||| |||| |||| |||| ||||||||||| ||||||||| || |||||  |||||| ||||||  ||||    
T  38359016 tggagaatgttaactaatgcctcaagggcaatggttaaacatctaaaataagtaagttttcatgaaaaagatgggtaatcgttactttatcaaaattaac 38359115  T
Q  185 atctcatattt 195  Q
    |||| ||||||    
T  38359116 atcttatattt 38359126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 4020109 - 4020177
Alignment:
Q  127 ccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||| ||||||  |||||| | ||||||    
T  4020109 ccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattt 4020177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 31494115 - 31494039
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||| |||| ||||| |||  |||| ||| ||||||    
T  31494115 ttaaacatccaaaacaagtaagtttttatgaaaaaattgtgtaatcattatttgattaaaattaacttcttatattt 31494039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 34146046 - 34145939
Alignment:
Q  87 gagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacat 186  Q
    ||||| ||||||| ||| | |||| ||| || |||| |||||||||| ||||| ||||| |||| || |||| |||||||||||||||||||  ||||||    
T  34146046 gagaatgttaaccggtgttccaagagcattgattaagcatccaaaactagtaaatttta-tgaacaaattgtataattattacttgatcaaaaataacat 34145948  T
Q  187 ctcatattt 195  Q
    || ||||||    
T  34145947 cttatattt 34145939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 53818829 - 53818884
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgat 174  Q
    |||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||    
T  53818829 ttaagcatccaaaataaataagttttaatgaaaaagttgtataatcattacttgat 53818884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 6785905 - 6785828
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaa-gttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||||||| ||||||| |||||||| | |||||||| |||||||||||||| ||||||| | ||||||    
T  6785905 ttaaacatcaaaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagtaacattttatattt 6785828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 26613176 - 26613099
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaa-gttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||||||||||| || ||||| ||| ||||||||||||||||| |||  |||||| | ||||||    
T  26613176 ttaagcatccaaaacaagtaagttttcataaaaaaagttatgtaattattacttgattaaaaataacattttatattt 26613099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 635826 - 635746
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    ||||||| || |||| |||||||||||  |||||||| ||  |||||||||||||| |||| || |||||| |||||||||    
T  635826 aagggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatct 635746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 11676857 - 11676781
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    ||||||| || |||| ||||||||||||| ||||||| | |||||| |||||| || |||| ||||||||| |||||    
T  11676857 aagggcattggttaaacatccaaaacaagcaagttttcaagaaaaaattgtgttatcattatttgatcaaaagtaac 11676781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 42437858 - 42437757
Alignment:
Q  85 tggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    ||||||| | ||||||||||  |||||||| || |||| ||||||||||| | ||  ||| ||||||||||| |||||| |||||  ||||||| |||||    
T  42437858 tggagaatgctaaccagtgccccaagggcattggttaagcatccaaaacacgcaaaattttatgaaaaagttatgtaatcattac--gatcaaaagtaac 42437761  T
Q  185 atct 188  Q
    ||||    
T  42437760 atct 42437757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 55446736 - 55446811
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||| ||||||||||| || ||||||||||||||| ||||||| || ||| ||||||||| ||||||    
T  55446736 ttaaacatctaaaagaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatattt 55446811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 37043082 - 37043028
Alignment:
Q  133 caagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatc 187  Q
    |||||||||||| |  ||||||| || |||| |||||||||||||||||||||||    
T  37043082 caagtaagtttttaataaaaagtagtataatcattacttgatcaaatgtaacatc 37043028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 12109653 - 12109705
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattactt 171  Q
    |||| ||||||||||||  || |||| ||||||||||||| ||||||||||||    
T  12109653 ttaagcatccaaaacaaacaattttttatgaaaaagttgtataattattactt 12109705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 25319466 - 25319542
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| ||||||| |||||||||||| ||||| |||||||| |||| ||  ||||| ||||||| | ||||||    
T  25319466 ttaaacatctaaaacaattaagttttaatgtaaaaggtgtgtaatcattatttagtcaaaagtaacattttatattt 25319542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 600350 - 600451
Alignment:
Q  94 ttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatat 193  Q
    |||||||||||| |||| |||||| |||| |||| ||||||| |||||||| |||||||||||||| ||| ||||||| |||||| ||||||||| ||||    
T  600350 ttaaccagtgctccaagtgcaatggttaaacatctaaaacaaataagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaacatcttatat 600449  T
Q  194 tt 195  Q
    ||    
T  600450 tt 600451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 44649060 - 44648972
Alignment:
Q  107 caagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||| ||||||| |||||| ||||||| | ||||||    
T  44649060 caagggcaatgattaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattt 44648972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 3137408 - 3137472
Alignment:
Q  124 catccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    |||||||||||| |||||||  |||||||||||||||||| |||||||||||||| |||||||||    
T  3137408 catccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatct 3137472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10029165 - 10029241
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||||||| ||||||| |||| ||||||||||||| |||| |||||||||||||| ||||||||| ||||||    
T  10029165 ttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatattt 10029241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 547075 - 547124
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  547075 aaaacaagtacgttttaatgaaaaagttgtgtaattattatttgatcaaa 547124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 23425371 - 23425318
Alignment:
Q  125 atccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  23425371 atccaaaacaagtacgttttaatgaaaaagttgtgtaatcattatttgatcaaa 23425318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 17720322 - 17720212
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgctta--atcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    |||||| ||||||||||||  |||||||| || |||  | ||||||||||||  ||||||| |||||||||||||||||| ||||| ||||||||  |||    
T  17720322 ggagaatgttaaccagtgcc-caagggcattggttataagcatccaaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataa 17720224  T
Q  184 catctcatattt 195  Q
    ||||| ||||||    
T  17720223 catcttatattt 17720212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 27507068 - 27506980
Alignment:
Q  107 caagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||| ||||| |||  |||| ||||||||||| |||| ||||||||||||||||||||||| || |||||| |||| |||| ||||||    
T  27507068 caaggacaatggttacgcatctaaaacaagtaaattttcatgaaaaagttgtgtaattattattttatcaaaagtaatatcttatattt 27506980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 23725759 - 23725684
Alignment:
Q  95 taaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattact 170  Q
    ||||||||||  | |||||| || |||| ||||||||||||||||||||| ||||||||||||||| || ||||||    
T  23725759 taaccagtgcccccagggcattggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtgatcattact 23725684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 34678351 - 34678250
Alignment:
Q  84 atggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    |||||||| | |||| | |||| ||| ||||||| |||| ||| ||||||||| || ||||||| ||||| || ||||||||||||||||||||| ||||    
T  34678351 atggagaatgctaactattgctccaaaggcaatggttaagcattcaaaacaagcaacttttaataaaaaa-ttatgtaattattacttgatcaaaagtaa 34678253  T
Q  184 cat 186  Q
    |||    
T  34678252 cat 34678250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 35901526 - 35901457
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||| |||| || || ||| |||||||||    
T  35901526 ttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatct 35901457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 40489842 - 40489929
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||| ||||  ||| ||||||| |||||||| ||||||||||| |||||| ||||||| |||||  ||||||| | ||||||    
T  40489842 aagggcaatggttaaatatctaaaacaaataagtttttatgaaaaagttatgtaatcattactttatcaatagtaacattttatattt 40489929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 43917557 - 43917655
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    |||||| | |||||||||| | ||||  | || |||| |||||||||||||||| |||| || ||||| |||||||||||||| ||||| ||| |||||    
T  43917557 ggagaatgctaaccagtgcattaaggatattggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaac 43917655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 6270249 - 6270200
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||||||||||||| || ||||||||||||||| ||||||| ||||||    
T  6270249 aaaacaagtaagttttcataaaaaagttgtgtaatcattactttatcaaa 6270200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 1342317 - 1342400
Alignment:
Q  111 ggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||| |||| |||| |||| ||||||||||| || ||||||||||||||| |||  || |||||| ||||||||| ||||||    
T  1342317 ggcaatggttaagcatctaaaataagtaagttttcataaaaaagttgtgtaatcatt-gtttatcaaaagtaacatcttatattt 1342400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 11150890 - 11151001
Alignment:
Q  83 tatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgta 182  Q
    ||||||||| | |||||| |||   ||||||| || |||| ||| ||||| ||||||||||| |  ||||| ||||||||| |||| ||||||||| |||    
T  11150890 tatggagaatgctaaccactgccctaagggcattggttaagcattcaaaataagtaagttttta-aaaaaaattgtgtaatcattatttgatcaaaagta 11150988  T
Q  183 acatctcatattt 195  Q
    |||||| ||||||    
T  11150989 acatcttatattt 11151001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 42361618 - 42361584
Alignment:
Q  125 atccaaaacaagtaagttttaatgaaaaagttgtg 159  Q
    |||||||||||||||||||| ||||||||||||||    
T  42361618 atccaaaacaagtaagttttcatgaaaaagttgtg 42361584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 3347590 - 3347545
Alignment:
Q  150 aaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||||||||||||| || ||| ||||||||| ||||||    
T  3347590 aaaagttgtgtaattattactttattaaaagtaacatcttatattt 3347545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 10652841 - 10652793
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaa 177  Q
    ||||||||||| |||| ||||||| |||||||||| ||||||| |||||    
T  10652841 aaaacaagtaaatttttatgaaaatgttgtgtaatcattactttatcaa 10652793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 41436295 - 41436397
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||| ||||| ||||||  ||| ||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||| || ||||||  |||||    
T  41436295 ggagaatgttaatcagtgccccaaaggcaatggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaaataaca 41436394  T
Q  186 tct 188  Q
    |||    
T  41436395 tct 41436397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 40574286 - 40574177
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||| | ||||||||||  ||||||||||| |||| |||||||||||||||  |||| |||||||||||||||||||||||||  |||||| || |||    
T  40574286 ggagaatgctaaccagtgccccaagggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttaca 40574187  T
Q  186 tctcatattt 195  Q
    | | ||||||    
T  40574186 ttttatattt 40574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 18717853 - 18717929
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||  || |||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  18717853 ttaagcatccaaaacaaacaaattttcatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattt 18717929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 4978862 - 4978786
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||| || |||||||| || |||| |||||||||| |||||||||||||| ||||||||| ||||||    
T  4978862 ttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattt 4978786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 4996770 - 4996694
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||| || |||||||| || |||| |||||||||| |||||||||||||| ||||||||| ||||||    
T  4996770 ttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattt 4996694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 6315866 - 6315966
Alignment:
Q  95 taaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatatt 194  Q
    ||||||||||| |||| ||| || |||| |||||||||||| ||| ||||  | ||||| ||||||||| ||||||||||||||  |||||||| |||||    
T  6315866 taaccagtgctccaagagcattggttaaacatccaaaacaaataaatttttgtaaaaaaattgtgtaatcattacttgatcaaaaataacatcttatatt 6315965  T
Q  195 t 195  Q
    |    
T  6315966 t 6315966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 13738505 - 13738429
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||||||||||| || ||||| ||||||||| ||||||| |||| | ||||||||| ||||||    
T  13738505 ttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattt 13738429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 27896474 - 27896542
Alignment:
Q  127 ccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |||||| |||||| || ||||||    
T  27896474 ccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatattt 27896542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 8580481 - 8580591
Alignment:
Q  85 tggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    ||||||| | ||||||||||   ||||||| || |||| ||||||||  |||| |||||| ||||||||  ||| |||||||||||| |||||| |||||    
T  8580481 tggagaatgctaaccagtgccctaagggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaagtaac 8580580  T
Q  185 atctcatattt 195  Q
    |||| ||||||    
T  8580581 atcttatattt 8580591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 40346717 - 40346787
Alignment:
Q  125 atccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||| ||||||||||| |||||||||||||| ||| |||| |||||||||  |||||||| ||||||    
T  40346717 atccaaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattt 40346787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 42251597 - 42251654
Alignment:
Q  106 tcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaat 163  Q
    ||||||||| || |||| ||||||||||||||||||||  ||||||||||||||||||    
T  42251597 tcaagggcattggttaagcatccaaaacaagtaagtttacatgaaaaagttgtgtaat 42251654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 6462709 - 6462637
Alignment:
Q  111 ggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    ||||||| |||| ||| |||||||| ||||||||||| |||||||||| ||||||||| || |||||| ||||    
T  6462709 ggcaatgattaagcattcaaaacaaataagttttaataaaaaagttgtataattattattttatcaaaagtaa 6462637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 38024290 - 38024215
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||||||||||||   ||||||||||||||||| ||||||||||| ||||||||| |||| |||| ||||||    
T  38024290 ttaaacatccaaaacaagcccgttttaatgaaaaagttatgtaattattatttgatcaaa-gtaatatcttatattt 38024215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 23453353 - 23453424
Alignment:
Q  125 atccaaaacaagtaagttttaatg-aaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||| ||||||| ||| |||||||||||||||  ||| ||||||||| ||||||||| ||||||    
T  23453353 atccaaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattt 23453424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 28331364 - 28331305
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||| ||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||||||    
T  28331364 ttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaa 28331305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 43131861 - 43131810
Alignment:
Q  127 ccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||||||||||||||| || |||| || ||||||||||||||||||||||    
T  43131861 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 43131810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 13717168 - 13717233
Alignment:
Q  106 tcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattactt 171  Q
    ||||||| |||| |||| |||| |||| ||||||||||| || |||||||| ||||||||||||||    
T  13717168 tcaagggtaatggttaagcatctaaaataagtaagttttcatcaaaaagttatgtaattattactt 13717233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 18857437 - 18857513
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||| |||||||||||| |||| |||||||  | ||||||||||||||| ||||||  |||||| ||||||||    
T  18857437 ttaagcattcaaaacaagtaaattttcatgaaaatatcgtgtaattattactttatcaaagataacatatcatattt 18857513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 4186405 - 4186451
Alignment:
Q  149 aaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||| |||||||||||||||| ||||||||||||||| | ||||||    
T  4186405 aaaaaattgtgtaattattactagatcaaatgtaacattttatattt 4186451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 4557550 - 4557651
Alignment:
Q  95 taaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatg-aaaaagttgtgtaattattacttgatcaaatgtaacatctcatat 193  Q
    ||||||||||   |||||||||| |||| ||||||| | ||||||||||| ||| ||||||||| ||||| ||||||  ||||||  |||| ||| ||||    
T  4557550 taaccagtgccctaagggcaatggttaagcatccaagataagtaagtttttatgaaaaaagttgagtaataattactcaatcaaaaataacttcttatat 4557649  T
Q  194 tt 195  Q
    ||    
T  4557650 tt 4557651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 12094955 - 12095037
Alignment:
Q  113 caatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||| |||| ||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||| |||| |||| ||||||    
T  12094955 caatgtttaaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattt 12095037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 19480550 - 19480616
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||| ||||||    
T  19480550 aaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 2824936 - 2824851
Alignment:
Q  109 agggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatatt 194  Q
    |||||| || |||| |||| |||||||| ||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||    
T  2824936 agggcattgattaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatatt 2824851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 27284040 - 27284151
Alignment:
Q  84 atggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    |||||||| |||||| ||| |  |||||||| || |||| ||||||||| || |||||||| || ||||||||||| ||| |||| ||||||||| ||||    
T  27284040 atggagaatgttaacgagtaccccaagggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaa 27284139  T
Q  184 catctcatattt 195  Q
    ||||| ||||||    
T  27284140 catcttatattt 27284151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 28740277 - 28740364
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||||| || ||||| ||||||| ||||||  || ||||| ||||||    
T  28740277 aagggcaatgattaatcatctaaaacaaataagttttaatgaaaaagatgcgtaatcattactttatcaaaaatatcatcttatattt 28740364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 20775037 - 20775151
Alignment:
Q  81 tttatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatg 180  Q
    ||||||||||| | |||  |||||| ||| | || || |||| ||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||      
T  20775037 tttatggagaatgctaaatagtgctccaaagacattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaa 20775136  T
Q  181 taacatctcatattt 195  Q
    ||| |||| ||||||    
T  20775137 taatatcttatattt 20775151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 39810850 - 39810737
Alignment:
Q  81 tttatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatg 180  Q
    ||||||||||| | |||| | |||  |||||| | || |||| |||||||||||| || ||||| |||| ||| |||||||||||||||||||||||| |    
T  39810850 tttatggagaatgctaactattgccccaagggtattggttaaacatccaaaacaaatatgttttcatgataaa-ttgtgtaattattacttgatcaaaag 39810752  T
Q  181 taacatctcatattt 195  Q
    |||||||| ||||||    
T  39810751 taacatcttatattt 39810737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 48419041 - 48419140
Alignment:
Q  84 atggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    |||||||| | |||| ||||| | |||||||||  |||| |||  |||||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||    
T  48419041 atggagaatgctaactagtgccttaagggcaatagttaagcatataaaacaagtaagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaa 48419140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 31991602 - 31991492
Alignment:
Q  85 tggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    ||||||| | |||||| || ||||| ||||||| |||| |||  |||| |||||| |||| |||||||| | ||||||||||||||| ||||||  ||||    
T  31991602 tggagaacgctaaccaatgtttcaaaggcaatggttaaacatataaaataagtaaattttcatgaaaaaatcgtgtaattattactttatcaaaaataac 31991503  T
Q  185 atctcatattt 195  Q
    |||| ||||||    
T  31991502 atcttatattt 31991492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 52837388 - 52837318
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    ||||||| || |||| ||||||||||||| || |||| |||||||||||||||||| ||||| ||||||||    
T  52837388 aagggcattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaataattacgtgatcaaa 52837318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 36506816 - 36506747
Alignment:
Q  83 tatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaa 152  Q
    ||||||||| | |||||| |||| |||||||| ||||||| |||||||||||||||| |||| |||||||    
T  36506816 tatggagaatgctaaccaatgctccaagggcattgcttaagcatccaaaacaagtaaattttcatgaaaa 36506747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 2565510 - 2565454
Alignment:
Q  130 aaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacat 186  Q
    ||||||||||||||| ||  |||||||||||||| |||||||||||||| |||||||    
T  2565510 aaacaagtaagtttttatagaaaagttgtgtaatcattacttgatcaaaagtaacat 2565454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 31089878 - 31089827
Alignment:
Q  135 agtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacat 186  Q
    |||||||||| |||||||||||||||||| ||||||| |||||| |||||||    
T  31089878 agtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacat 31089827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 44190235 - 44190298
Alignment:
Q  130 aaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||||||   ||| ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  44190235 aaacaagtaagttttc--gaataagttatgtaattattacttgatcaaaagtaacatcttatattt 44190298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 31861511 - 31861462
Alignment:
Q  146 atgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||| ||||||||| |||||||||||||| ||||||||| ||||||    
T  31861511 atgaaaaatttgtgtaatcattacttgatcaaaagtaacatcttatattt 31861462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 28176746 - 28176838
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||| ||||||||||||  ||||||  ||  |||| |||| |||||||  ||||||||||||||||| |||||||| |||| || ||||||    
T  28176746 ggagaatgttaaccagtgccacaagggtcatagttaagcatctaaaacaatgaagttttaatgaaaaagatgtgtaatcattattttatcaaa 28176838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 22019615 - 22019658
Alignment:
Q  128 caaaacaagtaagttttaatgaaaaagttgtgtaattattactt 171  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  22019615 caaaacaagtaagttttcaagaaaaagttgtgtaatcattactt 22019658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 44639887 - 44639946
Alignment:
Q  135 agtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatatt 194  Q
    |||| ||||| || ||||||||||||||| ||||||| |||||| ||||||||| |||||    
T  44639887 agtatgttttcatcaaaaagttgtgtaatcattacttaatcaaaagtaacatcttatatt 44639946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 7437920 - 7437863
Alignment:
Q  138 aagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||| | |||||||||||||||| || ||||| ||||| ||||||||| ||||||    
T  7437920 aagtttttacgaaaaagttgtgtaatcatgacttgttcaaaagtaacatcttatattt 7437863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 13967842 - 13967923
Alignment:
Q  114 aatgcttaatcatccaaaacaagtaagtttta-atgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatatt 194  Q
    |||| |||| ||||||||||| |||| ||||  ||||||||||||| |||| |||||||||| |||  |||||||| |||||    
T  13967842 aatggttaaacatccaaaacatgtaatttttttatgaaaaagttgtataatcattacttgataaaaaataacatcttatatt 13967923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 3708722 - 3708754
Alignment:
Q  146 atgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||||||||||||||| ||||||||||||||    
T  3708722 atgaaaaagttgtgtaatcattacttgatcaaa 3708754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 12076538 - 12076462
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||||||||||||| | || ||||| |||||| || ||| ||||||||||  |||||||| ||||||    
T  12076538 ttaaacatctaaaacaagtaagttctcatcaaaaaattgtgtgatcattgcttgatcaaaattaacatcttatattt 12076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 27133552 - 27133628
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||| | ||||||||| ||||||||||||| |||| ||||||||| ||||  ||| |||| ||||||    
T  27133552 ttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatattt 27133628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 36752752 - 36752696
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    ||||||||||| |||| |  ||||| |||||||||||||||||| ||||||| ||||    
T  36752752 aaaacaagtaaatttttaataaaaaattgtgtaattattacttggtcaaatggaaca 36752696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 26829485 - 26829571
Alignment:
Q  109 agggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||| |||| |||| |||| |||||| |||| |||||||||||||||||| ||||||| |||||| ||||||||| ||||||    
T  26829485 agggcaatggttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 26829571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 34347646 - 34347556
Alignment:
Q  93 gttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    ||||||| ||||  ||||||||||| |||| |||||||||||||||| | || |||||||||||||||||| ||||||| |||||| ||||    
T  34347646 gttaaccggtgccccaagggcaatgattaagcatccaaaacaagtaaatctttatgaaaaagttgtgtaatcattactttatcaaaagtaa 34347556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 46296007 - 46295905
Alignment:
Q  93 gttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcata 192  Q
    |||||||| || |||||||| | |  |||| |||||||||||| |||||||| ||||||||||||||| || |||||||||||||| ||||||| | |||    
T  46296007 gttaaccaatgtttcaagggtatttgttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttata 46295908  T
Q  193 ttt 195  Q
    |||    
T  46295907 ttt 46295905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 33148254 - 33148165
Alignment:
Q  106 tcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||| |  |||| ||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| ||||| ||||||    
T  33148254 tcaagggcatttgttaaacattcaaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatattt 33148165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 13969245 - 13969133
Alignment:
Q  83 tatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgta 182  Q
    ||||||||| ||||||||||||  |||| | | || |||| || |||||||||||||||||| |||||||| ||||||||| ||||||| || ||| |||    
T  13969245 tatggagaatgttaaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagta 13969146  T
Q  183 acatctcatattt 195  Q
    |||| | ||||||    
T  13969145 acattttatattt 13969133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 8001868 - 8001781
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||| |||| |||| ||||||||||| |||| ||| |||||||||||||| ||||||| |||||| ||||||||| ||||||    
T  8001868 aaggccaatggttaagcatctaaaacaagtaaattttcatgtaaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 8001781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 27688492 - 27688558
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||||||||| |||||||| ||||||||| ||||||| |||||| ||||||||| ||||||    
T  27688492 aaaacaagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattt 27688558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 17169393 - 17169304
Alignment:
Q  106 tcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||| |||| |||| |||| ||||||| |||||||| ||||||||||||| |||| ||||||| ||||||  |||||||| ||||||    
T  17169393 tcaagggtaatggttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactttatcaaaaataacatcttatattt 17169304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 10226562 - 10226496
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||| ||||||||| |||||||||||||||||| ||||||| ||||||  |||||||| ||||||    
T  10226562 aaaacaggtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattt 10226496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 38597489 - 38597559
Alignment:
Q  125 atccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||||| |||||| || | |||| ||||||    
T  38597489 atccaaaacaagtaagttttaataaaaaagttgtctaatcattacttaatcaaaagtgatatcttatattt 38597559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 11449073 - 11449139
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||| ||||||||||| |||||||||||| ||||||||  |||||| | ||||||    
T  11449073 aaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatattt 11449139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 17644872 - 17644831
Alignment:
Q  110 gggcaatgcttaatcatccaaaacaagtaagttttaatgaaa 151  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  17644872 gggcaatggttaagcatccaaaacaagtaagttttaatgaaa 17644831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 30941588 - 30941531
Alignment:
Q  110 gggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattatt 167  Q
    ||||| || |||| |||||| |||||||||||||  ||||||||||||||||||||||    
T  30941588 gggcattggttaagcatccagaacaagtaagtttacatgaaaaagttgtgtaattatt 30941531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 32187024 - 32187132
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||| | ||||| |||| |||||| || || ||||  || |||||||||||| ||||| || |||||||||| ||||||||  |||||||| ||||||    
T  32187024 ggagaatgataaccggtgcctcaaggacattggttaagaattcaaaacaagtaaattttattg-aaaagttgtgcaattattatctgatcaaaagtaaca 32187122  T
Q  186 tctcatattt 195  Q
    ||| ||||||    
T  32187123 tcttatattt 32187132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 52429639 - 52429700
Alignment:
Q  128 caaaacaagtaagttttaatgaaaa-agttgtgtaattattacttgatcaaatgtaacatct 188  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||| ||||||  |||||||||    
T  52429639 caaaacaagtaagctttaatgaaaaaagttgtgtaatcattactagatcaagagtaacatct 52429700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 39238844 - 39238900
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaaca 185  Q
    |||||||||||||||| |  ||||| | ||||||| |||||||||||||||||||||    
T  39238844 aaaacaagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaaca 39238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 49731262 - 49731203
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    |||||||||||||||| |  ||||||| || ||||||||| ||| |||||||||||||||    
T  49731262 aaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaatgtaacatct 49731203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 8279695 - 8279815
Alignment:
Q  75 catttctttatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaag-ttttaatgaaaaagttgtgtaattattacttga 173  Q
    ||||| |||| |||||| | |||| |||||  |||||||| || ||||||| | ||||||| |||| ||||||| |||| ||||| |||| |||| ||      
T  8279695 catttttttaaggagaaagctaactagtgccccaagggcattggttaatcaactaaaacaattaagattttaat-aaaacgttgtataatcattatttag 8279793  T
Q  174 tcaaatgtaacatctcatattt 195  Q
    ||||||||||||||| ||||||    
T  8279794 tcaaatgtaacatcttatattt 8279815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 5611239 - 5611163
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| ||| ||||||||| ||||||    
T  5611239 ttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatattt 5611163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 31223165 - 31223251
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatg-aaaaagttgtgtaattattactt 171  Q
    |||||| | ||||| ||||| |||||||| || |||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  31223165 ggagaatgctaaccggtgctccaagggcattggttaaacatccaaaacaagtaagttttcatgaaaaaagttgtgtaatcattactt 31223251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 19659724 - 19659648
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||| ||||||||||| || ||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  19659724 ttaaacatctaaaataagtaagtttttataaaaaagttgtgtaatcattagttgatcaaatataatatctcatattt 19659648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 8636859 - 8636785
Alignment:
Q  114 aatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    |||| |||| ||| ||||| ||||||||||| ||||||||||| |||||| ||||||| |||||| |||||||||    
T  8636859 aatgattaagcatacaaaataagtaagttttcatgaaaaagttatgtaatcattactttatcaaaagtaacatct 8636785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 32134038 - 32134124
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatatt 194  Q
    ||||||| || |||| |||| |||| |||||||||||  ||||||||||||||||| |||||||||| |||  |||||||| |||||    
T  32134038 aagggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatatt 32134124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 10008204 - 10008261
Alignment:
Q  127 ccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaac 184  Q
    |||||| ||||||||||| || ||||||| |||||||||||||||||||||| |||||    
T  10008204 ccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaac 10008261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 18493255 - 18493322
Alignment:
Q  128 caaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||||||||||| || |||||||| |||||| |||||||||||||| ||||||| | ||||||    
T  18493255 caaatcaagtaagtttttataaaaaagttttgtaataattacttgatcaaaagtaacattttatattt 18493322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 27082322 - 27082373
Alignment:
Q  127 ccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    ||||||||||||| |||| |||||||||||||||||| |||| |||||||||    
T  27082322 ccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgatcaaa 27082373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 17835086 - 17835010
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||| ||||||||| ||||||| |||||||| | || |||||||||||| |||||| |||| |||| ||||||    
T  17835086 ttaaacattcaaaacaagcaagttttcatgaaaaaatcgtataattattacttaatcaaaagtaatatcttatattt 17835010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 2911567 - 2911508
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatct 188  Q
    ||||||| |||||||| |  ||||||| || |||| ||||||||||||||||||||||||    
T  2911567 aaaacaaataagtttttaaaaaaaagtagtataatcattacttgatcaaatgtaacatct 2911508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 12677833 - 12677887
Alignment:
Q  129 aaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    |||||||||||||||| |  ||||||| ||||||| |||||||| ||||||||||    
T  12677833 aaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaatgtaa 12677887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 30929465 - 30929568
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagtttt--aatgaaaaagttgtgtaattattacttgatcaaatgtaa 183  Q
    |||||| | |||| |||||| |||||||| || |||| |  | ||||||||||| ||||  ||| ||||||| || ||||||||| ||||||||||||||    
T  30929465 ggagaatgctaactagtgctccaagggcattggttaagcgactaaaacaagtaaattttttaat-aaaaagtagtataattattatttgatcaaatgtaa 30929563  T
Q  184 catct 188  Q
    |||||    
T  30929564 catct 30929568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 2470354 - 2470430
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||| | ||||||||| ||||||||||||| |||| ||||||||| ||||  ||| |||| ||||||    
T  2470354 ttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatattt 2470430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 17345952 - 17345876
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||| |||||||| ||| ||||| |||||||||| ||||||   |||||||||||| ||||||| | ||||||    
T  17345952 ttaagcattcaaaacaaataaattttagtgaaaaagttatgtaatcgctacttgatcaaaagtaacattttatattt 17345876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 19320372 - 19320304
Alignment:
Q  129 aaaacaagtaagttttaatgaaaa-agttgtgtaattattacttgatcaaatgtaacatctcatatttg 196  Q
    |||||||||||||||| || |||| |||||||||||  |||||| |||||| ||||||| | |||||||    
T  19320372 aaaacaagtaagttttcataaaaagagttgtgtaatcgttactttatcaaaagtaacattttatatttg 19320304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 30840707 - 30840632
Alignment:
Q  119 ttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| ||||||||||||||||||||| |  ||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  30840707 ttaagcatccaaaacaagtaagttttcaa-aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattt 30840632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 27544579 - 27544668
Alignment:
Q  106 tcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||| |  |||| |||||||||||||||| |||| |||||||||||||||||| ||||| |||| |||  |||||||| ||||||    
T  27544579 tcaagggcattagttaaacatccaaaacaagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattt 27544668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 22293954 - 22294046
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaa 178  Q
    |||||| | ||||||||||  |||||| | || |||| ||| ||||||||||||||||| |||||||||||||| ||| |||| |||||||||    
T  22293954 ggagaatgctaaccagtgccacaagggtattggttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaa 22294046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 11815903 - 11815990
Alignment:
Q  108 aagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||||| ||||  ||  |||||||||||||||| ||||||||  |||||||| ||||||| |||||| ||||||||| ||||||    
T  11815903 aagggcaatgattaaatatttaaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattt 11815990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 30293943 - 30293857
Alignment:
Q  109 agggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||| || |||| ||| ||||||||  ||||||| |||||||| || |||||| |||||||||||||| ||||||||| ||||||    
T  30293943 agggcactggttaaccattcaaaacaaacaagttttcatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatattt 30293857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 14044772 - 14044714
Alignment:
Q  137 taagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||| || ||||||||||||||| |||||||||||||| |||| |||| ||||||    
T  14044772 taagtttttataaaaaagttgtgtaataattacttgatcaaaagtaatatcttatattt 14044714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 6646286 - 6646367
Alignment:
Q  114 aatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||| |||| |||| ||||||||||| | ||||||||||| ||||||||| ||||| | |||||| ||||||| | ||||||    
T  6646286 aatgtttaaacatctaaaacaagtaaatattaatgaaaaaattgtgtaatcattacattatcaaaagtaacatattatattt 6646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 7609682 - 7609595
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgat 174  Q
    |||||| ||||||||||||| |  ||||| || |||| || |||||| ||||||||||| || |||||||  |||||||||||||||||    
T  7609682 ggagaatgttaaccagtgctcccggggcattggttaagca-ccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgat 7609595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 1056818 - 1056888
Alignment:
Q  125 atccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||||| |||||||| |||||||| || |||||| |||| ||||| ||| ||||||| | ||||||    
T  1056818 atccaaaacaaataagtttttatgaaaaaattatgtaatcattatttgattaaaagtaacatattatattt 1056888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 36482072 - 36482130
Alignment:
Q  137 taagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    |||||||| || ||||||||||||||  |||| ||||||||| ||||||||| ||||||    
T  36482072 taagttttcataaaaaagttgtgtaaacattatttgatcaaaagtaacatcttatattt 36482130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 7319228 - 7319316
Alignment:
Q  86 ggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgat 174  Q
    |||||| ||||| ||||||  || ||||| || |||| |||||||||  |||||| ||  || ||||||||||||||| ||||||||||    
T  7319228 ggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgat 7319316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 30088 - 30021
Alignment:
Q  128 caaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatgtaacatctcatattt 195  Q
    ||||||||||||||||| |||||||  |||||||||||||| || || ||| ||||||||| ||||||    
T  30088 caaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagtaacatcttatattt 30021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 15514 - 15400
Alignment:
Q  81 tttatggagaaggttaaccagtgcttcaagggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaagttgtgtaattattacttgatcaaatg 180  Q
    ||||||||||| ||||| |||||  ||| ||| | || |||| ||| ||||| ||||||||||| ||||||||  ||| ||||  ||||||| ||||| |    
T  15514 tttatggagaatgttaatcagtgtctcaggggtattggttaaacattcaaaataagtaagtttttatgaaaaatgtgtataatcgttacttggtcaaaag 15415  T
Q  181 taacatctcatattt 195  Q
    |||||||| ||||||    
T  15414 taacatcttatattt 15400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 18137 - 18067
Alignment:
Q  109 agggcaatgcttaatcatccaaaacaagtaagttttaatgaaaaa-gttgtgtaattattacttgatcaaa 178  Q
    |||||| || |||| || ||||||||||||| |||| || ||||| |||||||||||||||||| ||||||    
T  18137 agggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaa 18067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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