View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_high_41 (Length: 208)
Name: NF13946_high_41
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 11442339 - 11442514
Alignment:
| Q |
14 |
ataatactcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11442339 |
ataacactcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
11442438 |
T |
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| Q |
114 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaacccc |
189 |
Q |
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| T |
11442439 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaacccc |
11442514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 11452912 - 11453087
Alignment:
| Q |
14 |
ataatactcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
113 |
Q |
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|||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11452912 |
ataacactcaatagtacaataggatagtaaattgaatttggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagcca |
11453011 |
T |
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| Q |
114 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaacccc |
189 |
Q |
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| T |
11453012 |
aggatttgactaaagttaacaaatttgagtaagaaatggaagtcccagatgaggaatcaataagggctaaaacccc |
11453087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 29911879 - 29911731
Alignment:
| Q |
41 |
taaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaagttaacaaatttg |
140 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||||| |||||| |||| |
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| T |
29911879 |
taaattgaatttggaagtagaagcaaaacaacatcaccttgtgaaacacccattttgtgtaaagcagaagccatggatttgactaaaggtaacaactttg |
29911780 |
T |
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| Q |
141 |
agtaagaaatggaagtcccagataaggaatcaataagggctaaaacccc |
189 |
Q |
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||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
29911779 |
agtaagaaatggaagacccagatgaagaatcaataagggctaaaacccc |
29911731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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