View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_1 (Length: 649)
Name: NF13946_low_1
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 39077587 - 39076970
Alignment:
| Q |
18 |
catacgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077587 |
catacgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggaga |
39077488 |
T |
|
| Q |
118 |
aatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077487 |
aatagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgtt |
39077388 |
T |
|
| Q |
218 |
cgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077387 |
cgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggcta |
39077288 |
T |
|
| Q |
318 |
agtctgccattgacaaacttgatcagcttccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataaaaatgcagt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39077287 |
agtctgccattgacaaacttgatcagcttccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataataatgcagt |
39077188 |
T |
|
| Q |
418 |
agaaacaaatgaaatggttattgcagcagaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcatt |
517 |
Q |
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| T |
39077187 |
agaaacaaatgaaatggttattgcagcagaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcatt |
39077088 |
T |
|
| Q |
518 |
caatcaactattgataatgatgctatagcattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077087 |
caatcaactattgataatgatgctatagcattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaa |
39076988 |
T |
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| Q |
618 |
caaacaactcaacacagg |
635 |
Q |
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|||||||||||||||||| |
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| T |
39076987 |
caaacaactcaacacagg |
39076970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 110 - 363
Target Start/End: Complemental strand, 30768521 - 30768268
Alignment:
| Q |
110 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
209 |
Q |
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|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
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| T |
30768521 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
30768422 |
T |
|
| Q |
210 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaa |
309 |
Q |
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| | |||||| | |||||||||||||| || ||||||| ||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||| |
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| T |
30768421 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaa |
30768322 |
T |
|
| Q |
310 |
aaaggctaagtctgccattgacaaacttgatcagcttccaccatggaatccaat |
363 |
Q |
| |
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|| || |||||| |||||||||| || | ||||||| |||||| ||||||| |
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| T |
30768321 |
gaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaat |
30768268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 324
Target Start/End: Original strand, 22327891 - 22328106
Alignment:
| Q |
109 |
aggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgat |
208 |
Q |
| |
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|||||||||||| || | || |||||||| |||||||| | ||||||| | |||||| | || ||||| || | ||| ||||||||||| ||||| |
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| T |
22327891 |
aggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagtaaagtttgcaccgcgaaaggtccccgtgac |
22327990 |
T |
|
| Q |
209 |
cgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatca |
308 |
Q |
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|| ||||| ||| | ||||| ||||| || ||||||||||| || || ||||| ||||||||||||||| | || |||||||| || |||||||| || | |
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| T |
22327991 |
cgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaagcagtcgattggctcatta |
22328090 |
T |
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| Q |
309 |
aaaaggctaagtctgc |
324 |
Q |
| |
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|||| ||||| ||||| |
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| T |
22328091 |
aaaaagctaaatctgc |
22328106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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