View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_11 (Length: 472)
Name: NF13946_low_11
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_11 |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 69 - 453
Target Start/End: Complemental strand, 10602 - 10218
Alignment:
| Q |
69 |
aaacatgacacttcaagcacgttatgaacagttgataacaggtttcaagtctaaaataataggaatacttaagtcataaaattattaatcatacaactct |
168 |
Q |
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| T |
10602 |
aaacatgacacttcaagcacgttatgaacagttgataacaggtttcaagtctaaaataataggaatacttaagtcataaaattattaatcatacaactct |
10503 |
T |
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| Q |
169 |
agcattttcttaccagtaaaatagataggcagagtaactggagttaatggcatttaccattctccttaaatgcaacatactagcatgatgactatacttt |
268 |
Q |
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| T |
10502 |
agcattttcttaccagtaaaatagataggcagagtaactggagttaatggcatttaccattctccttaaatgcaacatactagcatgatgactatacttt |
10403 |
T |
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| Q |
269 |
tgttctgataagaacttacatctatatcaagggcacttgaaatctgaagcaagagatcctctttcccataattattgattccaataacaacatcatggtc |
368 |
Q |
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| T |
10402 |
tgttctgataagaacttacatctatatcaagggcacttgaaatctgaagcaagagatcctctttcccataattattgattccaataacaacatcatggtc |
10303 |
T |
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| Q |
369 |
aggatgcgccgaaattatatcaattgcctgaaatcagacatcagccaagtcaaaataaaacatccgtaaaaattaagggggatat |
453 |
Q |
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| T |
10302 |
aggatgcgccgaaattatatcaattgcctgaaatcagacatcaaccaagtcaaaataaaacatccgtaaaaattaagggggatat |
10218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 10634 - 10594
Alignment:
| Q |
16 |
atgacaagatgcaaagttttctactgtgagataaacatgac |
56 |
Q |
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| T |
10634 |
atgacaagatgcaaagttttctactgtgagataaacatgac |
10594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 221 - 431
Target Start/End: Complemental strand, 21915290 - 21915076
Alignment:
| Q |
221 |
tttaccattctccttaaatgcaacatactagcatgatgactatacttttgttctgataagaactt----acatctatatcaagggcacttgaaatctgaa |
316 |
Q |
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||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||| |||| || || |||||||||| ||| ||||||||||||| |
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| T |
21915290 |
tttaccattctccttaaatacaacatagtagcatgatggatatacttttgatctgaagagaaattgaatacctctatatcaaaggcccttgaaatctgaa |
21915191 |
T |
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| Q |
317 |
gcaagagatcctctttcccataattattgattccaataacaacatcatggtcaggatgcgccgaaattatatcaattgcctgaaatcagacatcagccaa |
416 |
Q |
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| T |
21915190 |
gcaagagatcttctttcccataattattgattccgataataacatcatggtcaggatgagatgaaattatatcaattacctgaaatcagacatcaaccaa |
21915091 |
T |
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| Q |
417 |
gtcaaaataaaacat |
431 |
Q |
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| T |
21915090 |
gtcaaaagaaaacat |
21915076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 21915445 - 21915293
Alignment:
| Q |
21 |
aagatgcaaagttttctactgtgagataaacatgacgatttacatgtaaaacatgacacttcaagcacgttatgaacagttgataacaggtttcaagtct |
120 |
Q |
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||||||||||||||| || |||| ||||||||||| |||| ||| |||||||||||||||||||||| || ||||||||||||| |||||||||||| | |
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| T |
21915445 |
aagatgcaaagttttgta--gtgatataaacatgacaatttgcatataaaacatgacacttcaagcacattctgaacagttgatatcaggtttcaagttt |
21915348 |
T |
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| Q |
121 |
aaaataataggaatacttaa-gtcataaaattattaatcatacaactctagcatt |
174 |
Q |
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||||| |||| ||| |||| ||||||||||||| ||||||| |||||||||||| |
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| T |
21915347 |
aaaatgatagtgatagttaaggtcataaaattatcaatcataaaactctagcatt |
21915293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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