View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_12 (Length: 461)
Name: NF13946_low_12
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_12 |
 | |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 5653313 - 5652886
Alignment:
| Q |
16 |
ctactatatatttaccactattgtctatttcctatttactctctaaatctatctattttccctctacagaattcataaatgacaatagtattttcttcct |
115 |
Q |
| |
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|||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5653313 |
ctactacatacttaccaatattgtctatttcctatttactctctaaatctatctattttctctctacagaattcataaatgacaatagtattttcttcct |
5653214 |
T |
|
| Q |
116 |
tttgtcatcaacaaaaatttaaaagaaaatatacacttgagnnnnnnnntgctaattatctgtcttgatttccagctattcaatccttcagaatcctttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5653213 |
tttgtcatcaacaaaaatttaaaagaaaatatacacttgagaaaaaaaatgctaattatctgtcttgatttccagctattcaatccttcagaatcctttt |
5653114 |
T |
|
| Q |
216 |
cggacattgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5653113 |
cggacattgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaaga |
5653014 |
T |
|
| Q |
316 |
gatagataatttcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5653013 |
gatagataatttcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggt |
5652914 |
T |
|
| Q |
416 |
tctttcttcgcacttggcggtctagaag |
443 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
5652913 |
tctttcttcgcacttggcggtctagaag |
5652886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 221 - 439
Target Start/End: Complemental strand, 5666655 - 5666437
Alignment:
| Q |
221 |
attgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatag |
320 |
Q |
| |
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||||| ||||||| ||||||||||||||||||| |||| |||||||||| | ||||||||||| || ||||||| || | | | |||| ||| |
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| T |
5666655 |
attgtagttgagcgtgaatatgttgaatgcacttcatcatcaattcaagctatggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtag |
5666556 |
T |
|
| Q |
321 |
ataatttcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggttcttt |
420 |
Q |
| |
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| |||||||||||||| || ||| |||| ||||| | |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
5666555 |
agaatttcattgcaaaagcagttaaattccttgaagataaacaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttg |
5666456 |
T |
|
| Q |
421 |
cttcgcacttggcggtcta |
439 |
Q |
| |
|
|| || |||||||||||| |
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|
| T |
5666455 |
gtttgctcttggcggtcta |
5666437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 440
Target Start/End: Complemental strand, 5719835 - 5719622
Alignment:
| Q |
227 |
gttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatagataatt |
326 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||| | ||||||||||| || ||||||| || | | | |||| |||| |||| |
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| T |
5719835 |
gttgagcgtgaatatgttgaatgcacttcatcatcaattcaagctatggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatt |
5719736 |
T |
|
| Q |
327 |
tcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggttctttcttcgc |
426 |
Q |
| |
|
|||||||||| || |||| |||| ||||| | |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| || || |
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| T |
5719735 |
tcattgcaaaagcagttcaattccttgaagataaacaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttggtttgc |
5719636 |
T |
|
| Q |
427 |
acttggcggtctag |
440 |
Q |
| |
|
||||| ||||||| |
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| T |
5719635 |
tcttggtggtctag |
5719622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 439
Target Start/End: Complemental strand, 5687725 - 5687507
Alignment:
| Q |
221 |
attgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatag |
320 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| |||| | |||||||| | ||||||||||| || ||||||| || | | | |||| ||| |
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|
| T |
5687725 |
attgtagttgagcgtgaatatgttgaatgcacttcatcatcgattcaagctatggttttgtttaaaaaattatatcccgagcatagaaaggaagaagtag |
5687626 |
T |
|
| Q |
321 |
ataatttcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggttcttt |
420 |
Q |
| |
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| |||||||||||||| || ||| |||| ||||| | |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
5687625 |
agaatttcattgcaaaagcagttaaattccttgaagataaacaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttg |
5687526 |
T |
|
| Q |
421 |
cttcgcacttggcggtcta |
439 |
Q |
| |
|
|| || |||||||||||| |
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| T |
5687525 |
gtttgctcttggcggtcta |
5687507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 216 - 419
Target Start/End: Original strand, 105708 - 105911
Alignment:
| Q |
216 |
cggacattgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| | | || ||||| |
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|
| T |
105708 |
cggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaaga |
105807 |
T |
|
| Q |
316 |
gatagataatttcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggt |
415 |
Q |
| |
|
|||||| |||||||| | | || ||||||||||||||| | ||||||| |||||||||||||||||| || |||||| ||||||||| ||||||| |
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|
| T |
105808 |
gatagagaatttcatctccgaggcagttcgattcattgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggt |
105907 |
T |
|
| Q |
416 |
tctt |
419 |
Q |
| |
|
|||| |
|
|
| T |
105908 |
tctt |
105911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 217 - 416
Target Start/End: Original strand, 166246 - 166445
Alignment:
| Q |
217 |
ggacattgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagag |
316 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||| ||||||||||||| |||||||||| | | || |||||| |
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|
| T |
166246 |
ggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagag |
166345 |
T |
|
| Q |
317 |
atagataatttcattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggtt |
416 |
Q |
| |
|
||||| |||||||| | | || ||||||||||||||| | ||||||| |||||||||||||||||| || |||||| ||||||| | |||||||| |
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|
| T |
166346 |
atagagaatttcatctccgaggcagttcgattcattgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgctttacttatggtt |
166445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 228 - 432
Target Start/End: Complemental strand, 91051 - 90847
Alignment:
| Q |
228 |
ttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatagataattt |
327 |
Q |
| |
|
|||| |||||||||||||| ||||||||| || | ||| |||| ||||||||||| |||||||||||||||| | | || || ||||||||||| || |
|
|
| T |
91051 |
ttgaacatgaatatgttgagtgcactggaacaacgattgaagctttagttttgttcaagaagctatatccagggcataggaagaacgagatagataactt |
90952 |
T |
|
| Q |
328 |
cattgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggttctttcttcgca |
427 |
Q |
| |
|
||||| ||||| ||||||||| ||||| | |||||| || ||||||||||||||||| | |||||||||||| |||| ||||||||||| ||||| |
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|
| T |
90951 |
gattgccaatgcagttcgattccttgaagatacacaaaaaactgatggttcatggtatggaagttggggaatttgtttcacttatggttcttggttcgct |
90852 |
T |
|
| Q |
428 |
cttgg |
432 |
Q |
| |
|
||||| |
|
|
| T |
90851 |
cttgg |
90847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 415
Target Start/End: Original strand, 13054203 - 13054384
Alignment:
| Q |
234 |
atgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatagataatttcattgc |
333 |
Q |
| |
|
|||| |||||||| ||||||||| | ||||||||||| |||||| |||| || |||||||||||||| | | || || |||||||| |||||||||| |
|
|
| T |
13054203 |
atgagtatgttgagtgcactggaccggcaattcaagctttagttatgttcaataagctatatccagagcataggaagaacgagatagagaatttcattga |
13054302 |
T |
|
| Q |
334 |
aaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggt |
415 |
Q |
| |
|
||||| ||| ||||||||||| | |||||| | ||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
13054303 |
caatgcagttagattcattgaagatacacaaaaagatgatggttcatggtatggaagttggggaatttgcttcatttatggt |
13054384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 432
Target Start/End: Complemental strand, 12136172 - 12135970
Alignment:
| Q |
230 |
gagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatagataatttca |
329 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| | | || ||||||||||| |||| | |
|
|
| T |
12136172 |
gagcatgaatatgttgattgcactggatcggcaattcaagctttagttttgttcaagaaattatatccagagcataggaagaaagagatagacgatttta |
12136073 |
T |
|
| Q |
330 |
ttgcaaatgcggttcgattcattgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggttctttcttcgcact |
429 |
Q |
| |
|
|||| ||||| |||| || | | ||| | ||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| || ||||| |
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|
| T |
12136072 |
ttgccaatgcagttcaatacctagaagataaacaaacatctgatggttcatggtatggagcttggggtatttgcttcatttatggttcttggttggcact |
12135973 |
T |
|
| Q |
430 |
tgg |
432 |
Q |
| |
|
||| |
|
|
| T |
12135972 |
tgg |
12135970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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