View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13946_low_13 (Length: 453)

Name: NF13946_low_13
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13946_low_13
NF13946_low_13
[»] chr6 (49 HSPs)
chr6 (210-435)||(26802583-26802808)
chr6 (210-435)||(27592841-27593066)
chr6 (210-435)||(27604526-27604751)
chr6 (228-435)||(27718218-27718425)
chr6 (210-435)||(27677435-27677660)
chr6 (210-435)||(27679087-27679312)
chr6 (210-435)||(27706223-27706448)
chr6 (228-435)||(27610841-27611048)
chr6 (210-435)||(27698315-27698540)
chr6 (247-435)||(26884306-26884494)
chr6 (247-435)||(28786419-28786607)
chr6 (247-435)||(28792540-28792728)
chr6 (247-433)||(26861756-26861942)
chr6 (247-435)||(28781280-28781468)
chr6 (3-168)||(26802850-26803017)
chr6 (243-432)||(27427460-27427649)
chr6 (3-134)||(27427223-27427356)
chr6 (3-138)||(27604315-27604452)
chr6 (3-169)||(27592632-27592800)
chr6 (3-169)||(27679353-27679521)
chr6 (257-435)||(27531065-27531243)
chr6 (16-141)||(28786670-28786796)
chr6 (16-141)||(28792791-28792917)
chr6 (319-435)||(27724775-27724891)
chr6 (16-146)||(28781528-28781659)
chr6 (3-169)||(27677231-27677394)
chr6 (340-429)||(31284435-31284524)
chr6 (3-169)||(27706015-27706182)
chr6 (18-107)||(27698212-27698301)
chr6 (212-270)||(25538846-25538904)
chr6 (278-426)||(28234713-28234861)
chr6 (214-270)||(25580025-25580081)
chr6 (214-270)||(26143171-26143227)
chr6 (355-435)||(26646620-26646700)
chr6 (355-435)||(26752588-26752668)
chr6 (61-120)||(26646931-26646990)
chr6 (61-120)||(26752899-26752958)
chr6 (212-270)||(26056232-26056290)
chr6 (212-270)||(26076202-26076260)
chr6 (391-433)||(26823983-26824025)
chr6 (374-432)||(29826171-29826229)
chr6 (43-119)||(26056375-26056451)
chr6 (43-119)||(26076345-26076421)
chr6 (352-436)||(26623116-26623200)
chr6 (352-436)||(26729094-26729178)
chr6 (43-118)||(26143322-26143397)
chr6 (61-119)||(25483512-25483570)
chr6 (386-420)||(28139697-28139731)
chr6 (214-270)||(25482048-25482104)
[»] scaffold0349 (3 HSPs)
scaffold0349 (228-435)||(3259-3467)
scaffold0349 (228-435)||(14195-14402)
scaffold0349 (3-54)||(14084-14135)
[»] chr4 (13 HSPs)
chr4 (3-118)||(18723692-18723807)
chr4 (3-118)||(18731111-18731226)
chr4 (3-118)||(18655084-18655199)
chr4 (243-432)||(18073906-18074095)
chr4 (3-119)||(18699007-18699123)
chr4 (3-119)||(18679167-18679290)
chr4 (3-134)||(18074199-18074332)
chr4 (340-425)||(5090905-5090990)
chr4 (355-435)||(18655430-18655510)
chr4 (247-435)||(18731349-18731537)
chr4 (355-435)||(18679520-18679600)
chr4 (355-435)||(18699353-18699433)
chr4 (391-435)||(18724074-18724118)
[»] scaffold0277 (4 HSPs)
scaffold0277 (247-435)||(4529-4717)
scaffold0277 (247-435)||(13490-13678)
scaffold0277 (16-146)||(13299-13430)
scaffold0277 (16-146)||(4336-4469)
[»] scaffold0003 (2 HSPs)
scaffold0003 (243-432)||(59714-59903)
scaffold0003 (3-134)||(60007-60140)
[»] scaffold0419 (2 HSPs)
scaffold0419 (247-429)||(7672-7854)
scaffold0419 (16-146)||(7914-8045)
[»] chr1 (5 HSPs)
chr1 (212-435)||(28127492-28127712)
chr1 (359-435)||(28164320-28164395)
chr1 (61-120)||(28164033-28164092)
chr1 (23-119)||(267977-268079)
chr1 (80-120)||(28127352-28127392)
[»] scaffold0038 (1 HSPs)
scaffold0038 (278-420)||(34881-35023)
[»] chr8 (1 HSPs)
chr8 (355-435)||(29273736-29273816)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 210 - 435
Target Start/End: Complemental strand, 26802808 - 26802583
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||| |||||    
T  26802808 aggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccat 26802709  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| | ||||||| |||| || || |||||||||||||||||||    
T  26802708 gttatccttatcattttgaaaccttttttcatgctcagccaatgcttcaccatagctacatgtatgatggcgcacattagtaggatccacaccaaagaaa 26802609  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    | |||||| |||||||||||||||||    
T  26802608 ataggcaagacgaggcgaccctttgt 26802583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 27592841 - 27593066
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||  ||||||||| ||||||||| |||||    
T  27592841 aggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccat 27592940  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    ||| | |  |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  27592941 gtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcgcacatgagaaggatccacaccaaagaaa 27593040  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||  |||||||||||||    
T  27593041 acaggcaaaacagggcgaccctttgt 27593066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 27604526 - 27604751
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    |||||||| |||  |||| |||||||||||||| ||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| |  ||    
T  27604526 aggatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttat 27604625  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  27604626 gttatcctcatcattttgaaacctttttttatgctcagccaatgcttgaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaa 27604725  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||| ||||||||||||    
T  27604726 acaggcaaaacgacgcgaccctttgt 27604751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 228 - 435
Target Start/End: Original strand, 27718218 - 27718425
Alignment:
Q  228 ggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttg 327  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  27718218 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttg 27718317  T
Q  328 aaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcga 427  Q
    ||||||  ||| ||||||||||||||||||||||||||||||||| ||||| ||||  | || ||| ||||| || ||||||||||||||||||||||||    
T  27718318 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcga 27718417  T
Q  428 ccctttgt 435  Q
    ||||||||    
T  27718418 ccctttgt 27718425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 27677435 - 27677660
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||| ||||||||| |||||    
T  27677435 aggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccat 27677534  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    | | | |  |||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||| |||| |  || ||| |||||| ||||||||    
T  27677535 gcttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacaatagtaggttccacagcaaagaaa 27677634  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    ||||||| ||||||||||||||||||    
T  27677635 acaggcagaacgaggcgaccctttgt 27677660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 210 - 435
Target Start/End: Complemental strand, 27679312 - 27679087
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||  ||||||||  |||||||| |||||    
T  27679312 aggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccat 27679213  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    ||| | |  |||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |||| |||| |  || ||| |||||||||||||||    
T  27679212 gtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaacagtaggttccacaccaaagaaa 27679113  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    ||||||| ||||||||||||||||||    
T  27679112 acaggcagaacgaggcgaccctttgt 27679087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 27706223 - 27706448
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||| ||||||||| |||||    
T  27706223 aggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccat 27706322  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    ||| | |  |||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |||| |||| |  || ||| || |||||||| |||    
T  27706323 gtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttctacaccaaataaa 27706422  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    ||||||| ||||||||||||||||||    
T  27706423 acaggcagaacgaggcgaccctttgt 27706448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 228 - 435
Target Start/End: Original strand, 27610841 - 27611048
Alignment:
Q  228 ggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttg 327  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||||||   |||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  27610841 ggtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttg 27610940  T
Q  328 aaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcga 427  Q
    ||||||  ||| ||||||||||||||||||||||||||||||||| ||||| ||||  | || ||| ||||| || ||||||||||||||||||||||||    
T  27610941 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggttccacgccgaagaaaacaggcaaaacgaggcga 27611040  T
Q  428 ccctttgt 435  Q
    ||||||||    
T  27611041 ccctttgt 27611048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 27698315 - 27698540
Alignment:
Q  210 aggatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccat 309  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||| ||||||||| |||||    
T  27698315 aggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccat 27698414  T
Q  310 gttatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaa 409  Q
    ||| | |  |||||||||||||||  ||| |||||||||||||||||  |||||||||||||||||||| | || || ||  || |||||||| ||||||    
T  27698415 gtttttcggatcattttgaaacctcttttcatgctcagccaatgctttgccataactacctttatgatgtctcacattagttggttccacaccgaagaaa 27698514  T
Q  410 acaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||||||||||||||||    
T  27698515 acaggcaaaacgaggcgaccctttgt 27698540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 247 - 435
Target Start/End: Complemental strand, 26884494 - 26884306
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||| | ||    | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||    
T  26884494 atggtagccggacaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtca 26884395  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||||||||||||||| ||||||| |||| || || ||||||||||||||  |||||||||||||||||||||||||||||    
T  26884394 gccaatgcttcaccataactacctgtatgatgtcgcacatcagtaggatccacaccaacaaaaacaggcaaaacgaggcgaccctttgt 26884306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 247 - 435
Target Start/End: Complemental strand, 28786607 - 28786419
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| |||   |||||||  |||||| | |||||||| |||||||||||||||||||||||||||||  ||| |||| ||    
T  28786607 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccca 28786508  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||||||||| |||| ||||||| |||| || || |||||| |||||||||||||||||||||||||||||||| |||||    
T  28786507 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgt 28786419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 247 - 435
Target Start/End: Complemental strand, 28792728 - 28792540
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| |||   |||||||  |||||| | |||||||| |||||||||||||||||||||||||||||  ||| |||| ||    
T  28792728 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccca 28792629  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||||||||| |||| ||||||| |||| || || |||||| |||||||||||||||||||||||||||||||| |||||    
T  28792628 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgt 28792540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 247 - 433
Target Start/End: Complemental strand, 26861942 - 26861756
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    ||||||||| |||||||||||||| ||||  ||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||| ||||| |    
T  26861942 atggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttttcatgctta 26861843  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgacccttt 433  Q
    |||||||||||||||||| ||||| ||||||| |||| || || ||||||||  ||| |||||||||||||||||| ||||||||||    
T  26861842 gccaatgcttcaccataaatacctctatgatgtcgcacattagtaggatccatgccatagaaaacaggcaaaacgacgcgacccttt 26861756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 247 - 435
Target Start/End: Complemental strand, 28781468 - 28781280
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| |||   |||||||  |||||| | |||||||| |||||||||||||||||||||||||||||  ||| |||  ||    
T  28781468 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgtcca 28781369  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||||||||  |||| ||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| |||||    
T  28781368 gccaatgcttcaccataaggacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgt 28781280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 26803017 - 26802850
Alignment:
Q  3 catgtccaagaatataagtcagtatgta---acaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaata 99  Q
    ||||||||| || |||||| ||||||||   ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||    
T  26803017 catgtccaacaagataagttagtatgtactaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaata 26802918  T
Q  100 actaatacttgtttaaaaacaaatatagaaaaggtatttcccatttaaccttttaagatgagattattg 168  Q
    ||||||||||||||||||||  |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  26802917 actaatacttgtttaaaaacgtatataagaaaggtatttcccatttaacc-tttaagatgagattattg 26802850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 243 - 432
Target Start/End: Original strand, 27427460 - 27427649
Alignment:
Q  243 catcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatg 342  Q
    |||||||||||| || ||||||||||||| |    ||||||||||||||| |||||||||| |||||||| | | ||||||||||||||||  ||| |||    
T  27427460 catcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatg 27427559  T
Q  343 ctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctt 432  Q
    |||||||||||||| |||||| |||||| ||||||| |||| || || ||| ||||||||||||||||||||||||||||||| ||||||    
T  27427560 ctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaaccctt 27427649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 27427223 - 27427356
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacag--tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  27427223 catgtccaataatataagttagtatgtaacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataa 27427322  T
Q  101 ctaatacttgtttaaaaacaaatatagaaaaggt 134  Q
    |||| | ||||||||||||| | ||| |||||||    
T  27427323 ctaacaattgtttaaaaacataaataaaaaaggt 27427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 27604315 - 27604452
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtac--tcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| || |||||| ||||||||||||||||| | ||||||||||||||  ||| ||||||| |||||||||||||||||||||| |||||||||    
T  27604315 catgtccaataagataagttagtatgtaacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataa 27604414  T
Q  101 ctaatacttgtttaaaaacaaatatagaaaaggtattt 138  Q
    |||||||||||||||||||  | ||| |||||||||||    
T  27604415 ctaatacttgtttaaaaacgtaaataaaaaaggtattt 27604452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 27592632 - 27592800
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | ||||||||||||| ||||||||||||||| | ||| ||| |||||||||||||||||| ||| |||||||||||    
T  27592632 catgtgcaataagataagttagtgtctaacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataact 27592731  T
Q  103 aa---tacttgtttaaaaacaaatatagaaaaggtatttcccatttaaccttttaagatgagattattgt 169  Q
    ||   |||||||||||||    ||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  27592732 aatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacc-tttaagatgagattattgt 27592800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 27679521 - 27679353
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | ||||||||||||| ||||||||||||||| | ||| ||| |||||||||||||||||| ||| |||||||||||    
T  27679521 catgtgcaataagataagttagtgtctaacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataact 27679422  T
Q  103 aa---tacttgtttaaaaacaaatatagaaaaggtatttcccatttaaccttttaagatgagattattgt 169  Q
    ||   |||||||||||||    ||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  27679421 aatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacc-tttaagatgagattattgt 27679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 257 - 435
Target Start/End: Original strand, 27531065 - 27531243
Alignment:
Q  257 gacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctcagccaatgctt 356  Q
    ||||||||||| || |||   |||||  |||||||| |||||||||| ||  ||||||||||||||||||||||| || |||||||| |||| |||||||    
T  27531065 gacaagttagccgcttggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgctt 27531164  T
Q  357 caccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||| |||||| | ||||| |||| || || ||||||||||||||  |||||||||||||| || | |||||||||    
T  27531165 caccatatctacctgtgtgatgtcgcacatcagtaggatccacaccaataaaaacaggcaaaacaagacaaccctttgt 27531243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 28786796 - 28786670
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||| | ||||||||||||    
T  28786796 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgttta 28786697  T
Q  115 aaaacaaatatagaaaaggtatttccc 141  Q
    |||||  | ||||||||||| ||||||    
T  28786696 aaaacgtaaatagaaaaggtgtttccc 28786670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 28792917 - 28792791
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||| | ||||||||||||    
T  28792917 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgttta 28792818  T
Q  115 aaaacaaatatagaaaaggtatttccc 141  Q
    |||||  | ||||||||||| ||||||    
T  28792817 aaaacgtaaatagaaaaggtgtttccc 28792791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 319 - 435
Target Start/End: Original strand, 27724775 - 27724891
Alignment:
Q  319 atcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaa 418  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||| ||||  | || ||| ||||| || |||||||||||||||    
T  27724775 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaa 27724874  T
Q  419 acgaggcgaccctttgt 435  Q
    |||||||||||||||||    
T  27724875 acgaggcgaccctttgt 27724891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 28781659 - 28781528
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||| | |||| |||||||    
T  28781659 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaataattgttta 28781560  T
Q  115 aaaacaaatatagaaaaggtatttcccattta 146  Q
    |||||  | |||||||| || |||||||||||    
T  28781559 aaaacgtaaatagaaaaagtgtttcccattta 28781528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 27677231 - 27677394
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | ||||||||||||| |||||||||||||||   ||| ||| |||||||||||||||||| ||| |||||||||||    
T  27677231 catgtgcaataagataagttagtgtctaacaacatcacaatcacatccatgtact---aatgtattatacatttctaactatttcgacatataaataact 27677327  T
Q  103 aatacttgtttaaaaac-aaatatagaaaaggtatttcccatttaaccttttaagatgagattattgt 169  Q
    |||| |  ||| |||||   ||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  27677328 aatagtacttttaaaactgtatataaaaaaggtatttcccttttaacc-tttaagatgagattattgt 27677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 429
Target Start/End: Complemental strand, 31284524 - 31284435
Alignment:
Q  340 atgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgacc 429  Q
    ||||| |||||||||||| |||||||||||| ||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  31284524 atgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgacc 31284435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 27706015 - 27706182
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | |||||||||| || ||||||||||||||| | ||| ||| || ||||||||||||||| ||| |||||||||||    
T  27706015 catgtgcaataagataagttagtgtctaacaacatcccaatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataact 27706114  T
Q  103 aa---tacttgtttaaaaacaaatatagaaaaggtatttcccatttaaccttttaagatgagattattgt 169  Q
    ||   |||||||||||||    ||||| |||||||||||||| || |||  |||||||||||||||||||    
T  27706115 aatagtacttgtttaaaactgtatataaaaaaggtatttccctttaaac--tttaagatgagattattgt 27706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 27698212 - 27698301
Alignment:
Q  18 aagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataactaatac 107  Q
    |||| |||||| |||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||| ||| ||||||||||||||||    
T  27698212 aagttagtatgaaacaacatcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 25538904 - 25538846
Alignment:
Q  212 gatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagc 270  Q
    |||||||||||||| ||||||||| |||||| || ||| ||||||||||||||||||||    
T  25538904 gatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 25538846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 426
Target Start/End: Complemental strand, 28234861 - 28234713
Alignment:
Q  278 agagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttt-tatgctcagccaatgcttcaccataactacctttatga 376  Q
    |||||||  ||||||  ||||||||| |||||||||||||| | |||||| || ||||||| |||| ||| ||| ||||| ||||||||| || || |||    
T  28234861 agagccatcttccatttctgcaacctctccatgttatccttgttattttggaa-cttctttatatgatcatccagtgctttaccataactgcccttgtga 28234763  T
Q  377 tgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcg 426  Q
    || ||||  |||||||| |||||| || ||||||  |||||||| |||||    
T  28234762 tgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcg 28234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 25580081 - 25580025
Alignment:
Q  214 tttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagc 270  Q
    |||||||||||| ||||||||| |||||| || ||| ||||||||||||||||||||    
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 25580025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 26143227 - 26143171
Alignment:
Q  214 tttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagc 270  Q
    |||||||||||| ||||||||| |||||| || ||| ||||||||||||||||||||    
T  26143227 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 26143171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 26646700 - 26646620
Alignment:
Q  355 ttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||| ||  | |||||||| || |||| ||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  26646700 ttcaccataactcccactttgatgccgtatctgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgt 26646620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 26752668 - 26752588
Alignment:
Q  355 ttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||| ||  | |||||||| || |||| ||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  26752668 ttcaccataactcccactttgatgccgtatctgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgt 26752588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 26646990 - 26646931
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaaca 120  Q
    ||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||||||||    
T  26646990 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaaca 26646931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 26752958 - 26752899
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaaca 120  Q
    ||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||||||||    
T  26752958 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaaca 26752899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 26056290 - 26056232
Alignment:
Q  212 gatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagc 270  Q
    |||||||||||||| |||||| || |||||| || ||| ||||||||||||||||||||    
T  26056290 gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc 26056232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 26076260 - 26076202
Alignment:
Q  212 gatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagc 270  Q
    |||||||||||||| |||||| || |||||| || ||| ||||||||||||||||||||    
T  26076260 gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc 26076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 26824025 - 26823983
Alignment:
Q  391 aggatccacaccaaagaaaacaggcaaaacgaggcgacccttt 433  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  26824025 aggatccacaccatagaaaacaggcaaaacgaggcgccccttt 26823983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 29826229 - 29826171
Alignment:
Q  374 tgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctt 432  Q
    ||||| |||| |||||||||||||||| || |||||| |||||||||||| ||||||||    
T  29826229 tgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaacgagacgaccctt 29826171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 26056451 - 26056375
Alignment:
Q  43 tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaac 119  Q
    ||||||||||||| | ||||||||| || || |||||||| ||||||| ||||||||||| | ||| |||| |||||    
T  26056451 tcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 26076421 - 26076345
Alignment:
Q  43 tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaac 119  Q
    ||||||||||||| | ||||||||| || || |||||||| ||||||| ||||||||||| | ||| |||| |||||    
T  26076421 tcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 26623200 - 26623116
Alignment:
Q  352 tgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgtt 436  Q
    |||||| |||||||| ||  | |||||||| || |||| ||||||||| ||| |||| || ||||||||||| ||||||||||||    
T  26623200 tgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgtt 26623116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 26729178 - 26729094
Alignment:
Q  352 tgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgtt 436  Q
    |||||| |||||||| ||  | |||||||| || |||| ||||||||| ||| |||| || ||||||||||| ||||||||||||    
T  26729178 tgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgtt 26729094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 26143397 - 26143322
Alignment:
Q  43 tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 118  Q
    ||||||||||||| | | ||||||| || || |||||||| ||||||| ||||||||||| | |||||||| ||||    
T  26143397 tcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaa 26143322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 25483570 - 25483512
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaac 119  Q
    |||||||||| || |||||||| ||||||| ||||||||||| | |||||||| |||||    
T  25483570 aatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac 25483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 28139731 - 28139697
Alignment:
Q  386 tgagaaggatccacaccaaagaaaacaggcaaaac 420  Q
    |||||||||||||||||| ||||||||||||||||    
T  28139731 tgagaaggatccacaccatagaaaacaggcaaaac 28139697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 25482104 - 25482048
Alignment:
Q  214 tttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagc 270  Q
    |||||||||||| |||||| || |||||| || ||| ||||||||||| ||||||||    
T  25482104 tttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagc 25482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 228 - 435
Target Start/End: Original strand, 3259 - 3467
Alignment:
Q  228 ggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatc-cttatcatttt 326  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||| |  |  ||||||||    
T  3259 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcatttt 3358  T
Q  327 gaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcg 426  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||| |||| |||| |  || ||| ||||||||||| |||||||||| |||||||||    
T  3359 gaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttccacaccaaataaaacaggcagaacgaggcg 3458  T
Q  427 accctttgt 435  Q
    |||||||||    
T  3459 accctttgt 3467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 228 - 435
Target Start/End: Original strand, 14195 - 14402
Alignment:
Q  228 ggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttg 327  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||| ||||||||| |||||||| | |  |||||||||    
T  14195 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttg 14294  T
Q  328 aaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcga 427  Q
    ||||||  ||| ||||||||||||||||||||||||||||||||| ||||| ||||  | || ||| ||||| || ||||||||||||||||||||||||    
T  14295 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcga 14394  T
Q  428 ccctttgt 435  Q
    ||||||||    
T  14395 ccctttgt 14402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 14084 - 14135
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgt 54  Q
    ||||||||| || |||||| ||||||| ||||||||||| ||||||||||||    
T  14084 catgtccaataagataagttagtatgtgacaacatcacaatcacatccatgt 14135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 18723692 - 18723807
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18723692 catgtccaataagataagtcagtatgtaacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataact 18723791  T
Q  103 aatacttgtttaaaaa 118  Q
    ||||||||||||||||    
T  18723792 aatacttgtttaaaaa 18723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 18731111 - 18731226
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18731111 catgtccaataagataagtcagtatgtaacaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataact 18731210  T
Q  103 aatacttgtttaaaaa 118  Q
    ||||||||||||||||    
T  18731211 aatacttgtttaaaaa 18731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 18655084 - 18655199
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18655084 catgtccaataagataaatcagtgtgtaacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataact 18655183  T
Q  103 aatacttgtttaaaaa 118  Q
    ||||||||||||||||    
T  18655184 aatacttgtttaaaaa 18655199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 243 - 432
Target Start/End: Complemental strand, 18074095 - 18073906
Alignment:
Q  243 catcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatg 342  Q
    |||||||||||| || ||||||||||||| |    ||||||||||||||| |||||||||| |||||||| | | ||||||||||||||||  ||| |||    
T  18074095 catcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatg 18073996  T
Q  343 ctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctt 432  Q
    |||||||||||||| |||||| |||||| ||||||| |||| || || ||| ||||||||||||||||||||||||||||||| ||||||    
T  18073995 ctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaaccctt 18073906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 18699007 - 18699123
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18699007 catgtccaataagataaatcagtgtgtaacaacatcacagtcacatccatgtcctcatagtatatcatacatttctaactattttgacttataaataact 18699106  T
Q  103 aatacttgtttaaaaac 119  Q
    |||||||||||||||||    
T  18699107 aatacttgtttaaaaac 18699123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 18679167 - 18679290
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttct-------aactattttgacttata 95  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||    
T  18679167 catgtccaataagataagtcagtatgtaacaacatcacagtcacacccatgtactcataatatatcatacatttctaaattcaaactattttgacttata 18679266  T
Q  96 aataactaatacttgtttaaaaac 119  Q
    ||||||||||||||||||||||||    
T  18679267 aataactaatacttgtttaaaaac 18679290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 18074332 - 18074199
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacag--tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  18074332 catgtccaataatataagttagtatgtaacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataa 18074233  T
Q  101 ctaatacttgtttaaaaacaaatatagaaaaggt 134  Q
    |||| | ||||||||||||| | ||| |||||||    
T  18074232 ctaacaattgtttaaaaacataaataaaaaaggt 18074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 5090905 - 5090990
Alignment:
Q  340 atgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggc 425  Q
    ||||||||| | ||||||||||||||| ||  | ||||  |||| ||||||||| ||||||||| |||||| ||||||||| ||||    
T  5090905 atgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggc 5090990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 18655430 - 18655510
Alignment:
Q  355 ttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||| ||  | ||||| || || |||| ||||||||| ||| |||||||||| |||||||| |||||||||||    
T  18655430 ttcaccataacttccagtttgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgt 18655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 435
Target Start/End: Original strand, 18731349 - 18731537
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| | |   |||||||  |||||| | |||||||  |||||||| | ||| | |||||| || ||  |||| |||| |    
T  18731349 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactctttttgtgctta 18731448  T
Q  347 gcca-atgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |  | ||| |||||||||||| ||  | ||||| || || |||  ||||||||| ||| |||||||||||||||| || |||||||||||    
T  18731449 gtgagatg-ttcaccataactcccactttgatgtcgtatgtgactaggatccacgccatagaaaacaggcaaaacaagacgaccctttgt 18731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 18679520 - 18679600
Alignment:
Q  355 ttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||||||  | ||||| |  || |||| |||||||||  || |||||||||||||||| || |||||||||||    
T  18679520 ttcaccataactaccactttgatgtcatatgtgagtaggatccacgacatagaaaacaggcaaaacaagacgaccctttgt 18679600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 18699353 - 18699433
Alignment:
Q  355 ttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||| ||  | ||||| || || |||| |||||| || ||| ||||||||||||||||||| ||||| |||||    
T  18699353 ttcaccataactcccactttgatgtcgtatgtgagtaggatctacgccatagaaaacaggcaaaacgagacgaccttttgt 18699433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 18724074 - 18724118
Alignment:
Q  391 aggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||| ||| |||||||||||||||| || |||||||||||    
T  18724074 aggatccacgccatagaaaacaggcaaaacaagacgaccctttgt 18724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 247 - 435
Target Start/End: Original strand, 4529 - 4717
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| |||   |||||||  |||||| | |||||||| |||||||||| ||||||||||||||||||  ||| |||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||||||||||||||||  |||| ||||  | || ||| ||||| || ||||||||||||||||||||||||||||||||    
T  4629 gccaatgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgt 4717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 247 - 435
Target Start/End: Original strand, 13490 - 13678
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| |||   |||||||  |||||| | ||||| |  |||||||||| ||||||||||||||||||  ||| |||  ||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    ||||||||||||||||||| |||| ||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| |||||    
T  13590 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgt 13678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 13299 - 13430
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || || ||| | ||||||||||||    
T  13299 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgttta 13398  T
Q  115 aaaacaaatatagaaaaggtatttcccattta 146  Q
    |||||  | |||||||| || |||||||||||    
T  13399 aaaacgtaaatagaaaaagtgtttcccattta 13430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 4336 - 4469
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatat--catacatttctaactattttgacttataaataact-aatacttgtt 112  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||| |||| || || ||| | ||||||||||    
T  4336 ataagttagtatgtaacaacatcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtt 4435  T
Q  113 taaaaacaaatatagaaaaggtatttcccattta 146  Q
    |||||||  | ||| ||||||| |||||||||||    
T  4436 taaaaacgtaaatataaaaggtgtttcccattta 4469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 243 - 432
Target Start/End: Complemental strand, 59903 - 59714
Alignment:
Q  243 catcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatg 342  Q
    |||||||||||| || ||||||||||||| |    ||||||||||||||| |||||||||| |||||||| | | ||||||||||||||||  ||| |||    
T  59903 catcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatg 59804  T
Q  343 ctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctt 432  Q
    |||||||||||||| |||||| |||||| ||||||| |||| || || ||| ||||||||||||||||||||||||||||||| ||||||    
T  59803 ctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaaccctt 59714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 60140 - 60007
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacag--tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  60140 catgtccaataatataagttagtatgtaacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataa 60041  T
Q  101 ctaatacttgtttaaaaacaaatatagaaaaggt 134  Q
    |||| | ||||||||||||| | ||| |||||||    
T  60040 ctaacaattgtttaaaaacataaataaaaaaggt 60007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 247 - 429
Target Start/End: Complemental strand, 7854 - 7672
Alignment:
Q  247 atggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttttatgctca 346  Q
    |||||||||||||||||||||||| |||   |||||||  |||||| | ||||| |  |||||||||| ||||||||||||||||||  ||| |||  ||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  347 gccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgacc 429  Q
    ||||||||||||||||||| |||| ||||||| |||| || || |||||||||||||||||||||||||||||||||||||||    
T  7754 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgacc 7672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 8045 - 7914
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || || ||| | ||||||||||||    
T  8045 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgttta 7946  T
Q  115 aaaacaaatatagaaaaggtatttcccattta 146  Q
    |||||  | |||||||| || |||||||||||    
T  7945 aaaacgtaaatagaaaaagtgtttcccattta 7914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 435
Target Start/End: Original strand, 28127492 - 28127712
Alignment:
Q  212 gatttaagtaaagttgggtacccaggaggaccatcatggtagccggacaagttagcagcctggtgtagagccactttccatcgctgcaacctgtccatgt 311  Q
    |||||||||| ||| |||||||| |||   | || |||||||||||||||||||||||| |||  |||||| |  |||||| | ||||| |  |||||||    
T  28127492 gatttaagtatagtagggtaccctgga---ctataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgt 28127588  T
Q  312 tatccttatcattttgaaaccttcttttatgctcagccaatgcttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaac 411  Q
    | | ||| | |||||| |||||   |  ||||| ||| |   ||||||||||||| ||| ||||||  |||| || || ||||||||| |||||||||||    
T  28127589 ttttcttgttattttggaacctctctccatgcttagcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgccaaagaaaac 28127688  T
Q  412 aggcaaaacgaggcgaccctttgt 435  Q
    ||||||||| ||||||||||||||    
T  28127689 aggcaaaactaggcgaccctttgt 28127712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 28164320 - 28164395
Alignment:
Q  359 ccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||| ||| ||||||| |||| || || ||||||||| |||| ||||||||||||||| ||||||||||||||    
T  28164320 ccataactccctgtatgatgtcgcacatcagtaggatccacgccaa-gaaaacaggcaaaactaggcgaccctttgt 28164395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 28164033 - 28164092
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaaca 120  Q
    |||| ||||||||  ||||||||||||||| |||||||| || |||||||||||||||||    
T  28164033 aatacatcatacaactctaactattttgacatataaatatcttatacttgtttaaaaaca 28164092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 267977 - 268079
Alignment:
Q  23 agtatgtaacaacatcacag--tcacatccatg----tactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaa 116  Q
    |||||||||||||||||||   |||||||||||    |||||| ||||||| |||| ||||||||||||| | | |||||| ||||||||||| |||| |    
T  267977 agtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttaga 268076  T
Q  117 aac 119  Q
    |||    
T  268077 aac 268079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 28127352 - 28127392
Alignment:
Q  80 actattttgacttataaataactaatacttgtttaaaaaca 120  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  28127352 actattttgacatataaataccttatacttgtttaaaaaca 28127392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 420
Target Start/End: Complemental strand, 35023 - 34881
Alignment:
Q  278 agagccactttccatcgctgcaacctgtccatgttatccttatcattttgaaaccttcttt-tatgctcagccaatgcttcaccataactacctttatga 376  Q
    |||||||  ||||||  ||||||||| |||||||||||||| | |||||| || ||||||| |||| ||| ||| ||||| ||||||||| || || |||    
T  35023 agagccatcttccatttctgcaacctctccatgttatccttgttattttggaa-cttctttatatgatcatccagtgctttaccataactgcccttgtga 34925  T
Q  377 tgccgcatatgagaaggatccacaccaaagaaaacaggcaaaac 420  Q
    || ||||  |||||||| |||||| || ||||||  ||||||||    
T  34924 tgtcgcacgtgagaaggttccacatcatagaaaattggcaaaac 34881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 29273736 - 29273816
Alignment:
Q  355 ttcaccataactacctttatgatgccgcatatgagaaggatccacaccaaagaaaacaggcaaaacgaggcgaccctttgt 435  Q
    |||||||||||| ||  | ||||| || || |||| ||||||||| ||| |||| |||||||||| ||| |||||||||||    
T  29273736 ttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgt 29273816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University