View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_14 (Length: 432)
Name: NF13946_low_14
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 32583478 - 32583883
Alignment:
| Q |
16 |
atcaacacgtccatctttgtttacatcacaagcattcaacaaatccgtcgcgtatttatactcagacggtatctccaaagccaaataaccagcctcaatg |
115 |
Q |
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| T |
32583478 |
atcaacacgtccatctttgtttacatcacaagcattcaacaaatccgtcgcgtatttatactcagacggtatctccaaagccaaataaccagcctcaatg |
32583577 |
T |
|
| Q |
116 |
tgtgaaaattccaaataaccgcgattttccttatcaaaaaaggcgaaaatgcttctgattcgctcatccctttcttcctttgtctcttgtgatgccagta |
215 |
Q |
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| T |
32583578 |
tgtgaaaattccaaataaccgcgattttccttatcaaaaaaggcgaaaatgcttctgattctctcatccctttcttcctttgtctcttgtgatgccagta |
32583677 |
T |
|
| Q |
216 |
aaacatgatccattgttactggacccggtttcttcaacggattggttcgttcctccttcggcatgatgcgaaataatcaa-----aattcaattcaaatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32583678 |
aaacatgatccattgttactggacccggtttcttcaccggattggttcgttcctccttcggcatgatgcgaaataatcaaaattcaattcaattcaaatt |
32583777 |
T |
|
| Q |
311 |
ccacactgaaaagatcataaacaaagttagttattcattattatgaattatgaaaatgcggttttggaataagtgattacgcgattggattcggtaacgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32583778 |
ccacactgaaaagatcataaacaaagttagttattcattattatgaattatgaaaatgcggttttggaataagtgattacgcgattggattcggtaacgc |
32583877 |
T |
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| Q |
411 |
taatgt |
416 |
Q |
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|||||| |
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| T |
32583878 |
taatgt |
32583883 |
T |
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