View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_15 (Length: 409)
Name: NF13946_low_15
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_15 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 7774788 - 7775163
Alignment:
| Q |
17 |
tcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttgg |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7774788 |
tcaatgcaacttgagagcaagccagaaactttttgttgtgaaatgaaaatgaaatcttcaccaaggtcaccaccaaaaatgaatttggctaatgagttgg |
7774887 |
T |
|
| Q |
117 |
ttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774888 |
ttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaat |
7774987 |
T |
|
| Q |
217 |
tggaatgtaggatgatgaattgtaatgagtgtcacaatcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagttcct |
316 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774988 |
tggaatgtaggatgatgaattataatgagtgttacaatcataccaaaggttttctccagcaagatcaatggctagattgaaatttgttctaggagttcct |
7775087 |
T |
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| Q |
317 |
atgccaactgatgtgtagaatagattggttgatgggtcnnnnnnnataggaagaatgaaggagtgtggttgagatg |
392 |
Q |
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| T |
7775088 |
atgccaactgatgtgtagaatagattggttgatgggtctttttttataggaagaatgaaggagtgtggttgagatg |
7775163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 7767457 - 7767798
Alignment:
| Q |
13 |
aatatcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgag |
112 |
Q |
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| T |
7767457 |
aatatcaatgcaacttgagagtaagccagaaactttttgttgagaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttagctaatgag |
7767556 |
T |
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| Q |
113 |
ttggttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatg |
212 |
Q |
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| T |
7767557 |
ttggttgcagaagcagcacatgtgttgtttgtgcaacctggcttgaatgggccattgcagccaacacatgcagtatctgtacatcttgttgagccacatt |
7767656 |
T |
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| Q |
213 |
caattggaatgtaggatgatgaattgtaatgagtgtcacaatcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagt |
312 |
Q |
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||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767657 |
gaataggagtgtatgatgatgaattataatgagtgtcacaatcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagt |
7767756 |
T |
|
| Q |
313 |
tcctatgccaactgatgtgtagaatagattggttgatgggtc |
354 |
Q |
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| T |
7767757 |
tcctatgccaactgatgtgtagaatagattggttgatgggtc |
7767798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 65 - 354
Target Start/End: Complemental strand, 11252 - 10974
Alignment:
| Q |
65 |
atgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttggttgcagtagcaggacatgtattgtttgtgcaaccaggtttgaatgggc |
164 |
Q |
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|||| ||||||||| ||||||||| |||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
11252 |
atgatatcttcaccgaggccaccattgaaaatgaatttggcaaatgagttgattgtattagcaggacatgtattgtttgtgcaacctggtttgaaggggc |
11153 |
T |
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| Q |
165 |
cattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaattggaatgtaggatgatgaattgtaatgagtgtcacaatcataccatag |
264 |
Q |
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| T |
11152 |
cattgcaaccaatgcatgtaatatctggacatttttttgagccacattcaattggaaaataggatgatgaattgtagtgagtgtcacaatcataccaaag |
11053 |
T |
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| Q |
265 |
attttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggtc |
354 |
Q |
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| T |
11052 |
attttcacctgcaagatcaat-----------aattttttcgaggtgttcctatgccaactgatgtgtagaaaagattggttgatgggtc |
10974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 21268465 - 21268565
Alignment:
| Q |
19 |
aatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttggtt |
118 |
Q |
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|||||||| ||||| |||||| ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||| || ||||||||||| |
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| T |
21268465 |
aatgcaacaagagagcaagccataaactttttgttgtgaaatgaaaatcaaatcttcatcaaggttaccaccaaaaatgaatttgactgatgagttggtt |
21268564 |
T |
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| Q |
119 |
g |
119 |
Q |
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| T |
21268565 |
g |
21268565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 54302687 - 54302596
Alignment:
| Q |
35 |
aagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttggctaatgagttggttgcagtagca |
127 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||||| |||||||| |||||||| |||||||||||| |
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| T |
54302687 |
aagccagaaactttttgttgtgaaatgaaaattaaatcttcatcaaggttaacaccaaaaaggaatttgg-gaatgagttagttgcagtagca |
54302596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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