View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_16 (Length: 403)
Name: NF13946_low_16
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 28 - 387
Target Start/End: Complemental strand, 52512210 - 52511842
Alignment:
| Q |
28 |
taataataatattcttcttccttattataatactacttttcattt----------aggtgatatgtgtggtggtacaggaaaatggaaagctcttaacag |
117 |
Q |
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| T |
52512210 |
taataataataatattcttccttattataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacag |
52512111 |
T |
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| Q |
118 |
gaagtgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttctactttgctcatttcnnnnnnnccgtagtaaacg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |
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| T |
52512110 |
gaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttctaatttgctcatttctttttttct-tagtaaacg |
52512012 |
T |
|
| Q |
218 |
actaaattgacagattttccgtaggtcgaggaaagcttgtctgccctgtttgtttagaaactggtgtgccaaacaataaaggtcttctcaggaggcctga |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512011 |
actaaattgactgattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctga |
52511912 |
T |
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| Q |
318 |
cgcaaagaaactgcttgataagatgtataatggacgcctacttccaaattcttagaaggtatgtatacta |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52511911 |
cgcaaagaaactgcttgataagatgtataatggacgcctacttcccaattcttagaaggtatgtatacta |
52511842 |
T |
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