View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_17 (Length: 392)
Name: NF13946_low_17
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 36756591 - 36756226
Alignment:
| Q |
19 |
tctctttctatagcaaaagtgtctatttagttcatagacaagagcagatggcatatgtaaattaatactcaaatttagaaaacttgttatagaggaaaga |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36756591 |
tctctttctatagcaaaagtttctatttagttcatagacaagagcagatggcatatgtaaattaatactcaaatttagaaaacttgttatagaggaaaga |
36756492 |
T |
|
| Q |
119 |
aaaacagaaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatcc |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
36756491 |
aaaacataaagcaaaatgttagtttcaaggagaatccaaaacatcaaggtttaagtctggatgccaaacatacaacttgcattacggcgttaccaaatcc |
36756392 |
T |
|
| Q |
219 |
agctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36756391 |
agctttgtactgcaatgaaatttgatctttcaattcttcaattttagctttcaacctgtcaattgtaacccggtgattatcttatttgatcagtaatttg |
36756292 |
T |
|
| Q |
319 |
acattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
36756291 |
acattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatcccattcatct |
36756226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 36749124 - 36748931
Alignment:
| Q |
160 |
catcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaa |
259 |
Q |
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| T |
36749124 |
catcaaggtttaagtcttcatgcaaaaaatataacttgatttaccgcgttatcaaatccagctttgtactgcaatgagttttgatattttaattcttcaa |
36749025 |
T |
|
| Q |
260 |
tttcagctttcaacctgtcaattgtaacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgtt |
353 |
Q |
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||||||| || |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||| |||| |
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| T |
36749024 |
tttcagcatttaacctgtcaaccgtaacccagtgattatcttctttgatctgtaatttgacattactcttggaactttctacgtttaatacgtt |
36748931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 36755938 - 36755839
Alignment:
| Q |
285 |
aacccagtgattatcttatttgatcagtaatttgacattactcttgcaattttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
384 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
36755938 |
aacccagtgattatcttcttcgatcagtaatttgacattactcttggaattttctacgcttaattcgtccaaagttttctttaatttatcccgttcatct |
36755839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 21138790 - 21138672
Alignment:
| Q |
162 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
261 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| ||||||| | ||||| ||| || | || ||||||||||||| ||| |||| || |||| |||||||||| |
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| T |
21138790 |
tcaaggtttaagtcctgatgcaaaaaatacaacttgcttcaccgccttatcataaccggctttgtactgcactgacattttatacttcagttcttcaatt |
21138691 |
T |
|
| Q |
262 |
tcagctttcaacctgtcaa |
280 |
Q |
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||||| |||||| |||||| |
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| T |
21138690 |
tcagccttcaacttgtcaa |
21138672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 36772068 - 36772014
Alignment:
| Q |
217 |
ccagctttgtactgcaatgaaatttgatctttcaattcttcaatttcagctttca |
271 |
Q |
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|
||||||||||||||||| |||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
36772068 |
ccagctttgtactgcaaagaaatttgatctttcagttctttaatttcagccttca |
36772014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 36772210 - 36772170
Alignment:
| Q |
134 |
atgttagtttcaaggagaatccaaaacatcaaggtttaagt |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |
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| T |
36772210 |
atgttagtttcaagaagaatccaaaacatcaaggttcaagt |
36772170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 36767406 - 36767357
Alignment:
| Q |
335 |
tttctacgcttaattcgttcaaagttttctttaatttatctcgttcatct |
384 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
36767406 |
tttccacgcttaattcgtccaaagatttctttaaattatcccgttcatct |
36767357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 36749358 - 36749318
Alignment:
| Q |
82 |
aatactcaaatttagaaaacttgttatagaggaaagaaaaa |
122 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
36749358 |
aatactcaaatttagaaaatttgttacagaggaaagcaaaa |
36749318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 36767686 - 36767622
Alignment:
| Q |
58 |
aagagcagatggcatatgtaaattaatactcaaatttagaaaacttgttatagaggaaagaaaaa |
122 |
Q |
| |
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||||| ||||||||||| |||| |||||| |||||||||||||| | || ||||||||| |||| |
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| T |
36767686 |
aagagaagatggcatatctaaaccaatactaaaatttagaaaactagctacagaggaaagcaaaa |
36767622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 23432613 - 23432724
Alignment:
| Q |
162 |
tcaaggtttaagtctggatgccaaacatataacttgcattaccgcgttaccaaatccagctttgtactgcaatgaaatttgatctttcaattcttcaatt |
261 |
Q |
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|
|||||||||||| | ||||| ||| ||| ||||||| ||||||| || || | || ||||||||||| |||||||||| | |||||||| |||||| |
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| T |
23432613 |
tcaaggtttaagccctgatgcaaaatatacaacttgccttaccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatt |
23432712 |
T |
|
| Q |
262 |
tcagctttcaac |
273 |
Q |
| |
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||||| |||||| |
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|
| T |
23432713 |
tcagccttcaac |
23432724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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