View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13946_low_21 (Length: 357)
Name: NF13946_low_21
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 49379657 - 49379453
Alignment:
| Q |
1 |
cagacagataagcagatgcagagatattaatggtattgattataaaatgaacagcttgtgtattctgtgctggacatgattgaacattatgttttcttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49379657 |
cagacagataagcagatgcagagatattaatggtattgattataaaatgaacagcttgtgtattttgtgctggacatgattgaacattatgttttcttaa |
49379558 |
T |
|
| Q |
101 |
tataatgttacccctttccaaccaaaacattagtgacaaaattgtttattgccctcagttacttgtgattctgatcaatcctgaagaaataataagaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49379557 |
tataatgttacccctttccaaccaaaacattagtgacaaaattgtttattgccctcagttacttgtgattctgatcaatcctgaagaaataataagaaac |
49379458 |
T |
|
| Q |
201 |
tctta |
205 |
Q |
| |
|
||||| |
|
|
| T |
49379457 |
tctta |
49379453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 49379355 - 49379256
Alignment:
| Q |
244 |
tccacacaaattgacaagagtctgtttagtttgagaaaaacgttttagtttcatttgctatttttacttcaaattgtaaaatttacactttgtttctatt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49379355 |
tccacacaaattgacaagagtctgtttagtttgagaaaaacgttttagtttcatgtgctatttttacttcaaattgtaaaatttacactttgtttctatt |
49379256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 49379405 - 49379377
Alignment:
| Q |
205 |
aattaaaacaaactcctatttagctatgc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49379405 |
aattaaaacaaactcctatttagctatgc |
49379377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University