View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_25 (Length: 313)
Name: NF13946_low_25
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 29193950 - 29194240
Alignment:
| Q |
16 |
acttttttgctttaaactatttgttctggtttctatcacatcagatttcatctgaatacaataatatcttgcagctcaaccaactgttacagaggagaat |
115 |
Q |
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| T |
29193950 |
acttttttgctttaaactatttgttctggtttctatcacatcatatttcatctgaatacaataatatattgcagctcaaccaactgttacagaggagaat |
29194049 |
T |
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| Q |
116 |
gatctcaagtcccaaatagcggtacatattttggttttcacattttgcttagatgttatgttactatctgatgctttgatcaccacatgtcattgatatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29194050 |
gatctcaagtcccaaatagcggtacatattttggttttcacattttgcttagatgttatgttactatctgatgctttgatcaccacatgtcattgatatg |
29194149 |
T |
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| Q |
216 |
atgctcattgtgatatataagctttctctaagttatgaatatttgagaagtacatcttcttaactgattatttgttacttctgatattctt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29194150 |
atgctcattgtgatatataagctttctctaagttatgaatatttgagaagtacatcttcttaactgattatttgttacttctgatattctt |
29194240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 156 - 306
Target Start/End: Original strand, 26658944 - 26659091
Alignment:
| Q |
156 |
cattttgcttagatgttatgttactatctgatgctttgatcaccacatgtcattgatatgatgctcattgtgatatataagctttctctaagttatgaat |
255 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
26658944 |
cattttgcttacatgttatgttactatctgaggctttgatcaccacatgacattgatatgatgctcattatgatatacaagctttctctaagttatgaat |
26659043 |
T |
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| Q |
256 |
atttgagaagtacatcttcttaactgattatttgttacttctgatattctt |
306 |
Q |
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| T |
26659044 |
atttgagaagtaca---tcttaattgattatttgttgctcttgatattctt |
26659091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 33632040 - 33631750
Alignment:
| Q |
16 |
acttttttgctttaaactatttgttctggtttctatcacatcagatttcatctgaatacaataatatcttgcagctcaaccaactgttacagaggagaat |
115 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632040 |
acttttttgctttaaactatttgttctgatttctaccacatcatatttcatctgaatacaataatatcttgcagctcaaccaactgttacagaggagaat |
33631941 |
T |
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| Q |
116 |
gatctcaagtcccaaatagcggtacatattttggttttcacattttgcttagatgttatgttactatctgatgctttgatcaccacatgtcattgatatg |
215 |
Q |
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|||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
33631940 |
gatctcaagtcccaaatagcggtacaaattttggatttcgcattttgattagatgttatgttacaatctgatgctttaatcaccacataacattgatatg |
33631841 |
T |
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| Q |
216 |
atgctcattgtgatatataagctttctctaagttatgaatatttgagaagtacatcttcttaactgattatttgttacttctgatattctt |
306 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
33631840 |
atgctcatcatgatatataagctttctctaagttgtgaatatttgagaagtacatcttattaactgattatttgttactcctgatattctt |
33631750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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