View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_3 (Length: 561)
Name: NF13946_low_3
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_3 |
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| [»] scaffold0331 (1 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 7205832 - 7205533
Alignment:
| Q |
18 |
aatatgtcttgtgattcttataagttctaactttatttt-gtattaattttgctctgttaaatgaatcatggcaaatgggttaagttatgagaaagaagg |
116 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7205832 |
aatatgtgttgtgattcttctaagttctaactttatttttgtactaattttgctctgttaattgaatcatggcaaatgggttaagttatgagaaagaagg |
7205733 |
T |
|
| Q |
117 |
gttctgtgcaaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaatgggttccgccgttgggtttctcacttcttagttctgt |
216 |
Q |
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||| |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||| |
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| T |
7205732 |
gttatgtgcaaatgggttctgttaatatgcttattttgttctgttaattgaatcatggcaaataggttctgtcattgggtttctcacttcttagttctgt |
7205633 |
T |
|
| Q |
217 |
taattgatcatggcatgtgtgtcaatcagcaagctacaacctgaatcatttgccttttaattttgttaattgagctttgaactctattaattcatcacta |
316 |
Q |
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||||||||||||||||||||||||||| ||||| | |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7205632 |
taattgatcatggcatgtgtgtcaatctgcaagttgcaactttaatcatttgccttttaattttgttaattgatctttgaactctattaattcatcacta |
7205533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 804 - 1140
Alignment:
| Q |
18 |
aatatgtcttgtgattcttataagttctaactttatttt-gtattaattttgctctgttaaatgaatcatggcaaatgggttaagttatgagaaagaagg |
116 |
Q |
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||||||| || |||||||| |||||||||| || ||||| |||||||| | || ||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
804 |
aatatgtgttatgattcttctaagttctaatttgatttttgtattaatatccttcggttaattgaatcatggcaaatgggtttagttatgagaaagaggg |
903 |
T |
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| Q |
117 |
gttctgtgcaaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaatgggttccgccgttgggtttctcacttcttagttctgt |
216 |
Q |
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| T |
904 |
gttctatgcaaatgggttctgttaatatgcttattttgttttggtaattgaatcatggcaaataggttccgttgttgggtttctcacttcttagttctgt |
1003 |
T |
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| Q |
217 |
taattgatcatggcatgtgtgtcaatcagcaagctacaacctgaatcatttgccttttaattttgttaattgagctttgaactctattaattcatcacta |
316 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||| |||||| | |||||||||||||| |||| ||||||| ||| ||||||||| |
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| T |
1004 |
taattgatcatggcatgtttgtcagtctgcaagctacaacctgaatcatctgccttctgattttgttaattgatctttcaactctagtaagtcatcacta |
1103 |
T |
|
| Q |
317 |
gtttggattttatagatcatttagcacacattaacta |
353 |
Q |
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| T |
1104 |
gtttggattctatagatcatttatcacagattaacta |
1140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 48009715 - 48009876
Alignment:
| Q |
19 |
atatgtcttgtgattcttataagttctaactttatttt-gtattaattttgctctgttaaatgaatcatggcaaatgggttaagttatgagaaagaaggg |
117 |
Q |
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|||||| ||||||||||| |||||| ||| |||||||| |||||||||||| | |||||| |||||||||||||||||| |||||||||||||| ||||| |
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| T |
48009715 |
atatgtgttgtgattcttctaagttataattttatttttgtattaattttgttatgttaagtgaatcatggcaaatgggctaagttatgagaaataaggg |
48009814 |
T |
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| Q |
118 |
ttctgtgcaaatgagttttgttaatatgcttattttgttttgttaattgaatcatggcaaat |
179 |
Q |
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| T |
48009815 |
ttctgtgcaaacgagttctgttaatatgcttattttgttatgttaattgaatcatgacaaat |
48009876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 484 - 555
Target Start/End: Original strand, 53929203 - 53929274
Alignment:
| Q |
484 |
gtttaaagtggacccctaatttaattagttttatctccactaactgctatctatttttattcacaggttctg |
555 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
53929203 |
gtttaaagtggacccctaatttaattagtttgatctccactaactgctatctatttttatttacaggttctg |
53929274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 53929011 - 53929115
Alignment:
| Q |
359 |
cacattgcactgttttcctcttgtctactgtttactaagcacaacctt-gtatctgagtgggtttttctccatctttgatctaattctaaatcttagcag |
457 |
Q |
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||||||||||||||||||||||||| | |||||||||||||| |||| || ||| ||||||||||| ||| ||||| || || |||||||||||||||| |
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| T |
53929011 |
cacattgcactgttttcctcttgtcgaaggtttactaagcacatccttggtgtctaagtgggtttttatccctctttcatttacttctaaatcttagcag |
53929110 |
T |
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| Q |
458 |
tatag |
462 |
Q |
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||||| |
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| T |
53929111 |
tatag |
53929115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 7403248 - 7403157
Alignment:
| Q |
262 |
tcatttgccttttaattttgttaattgagctttgaactctattaattcatcactagtttggattttatagatcatttagcacacattaacta |
353 |
Q |
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||||||||||| | |||||||||||||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
7403248 |
tcatttgccttctgattttgttaattgatctttcaactctagtaagtcatcactagtttggattctatagatcatttatcacagattaacta |
7403157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 22276 - 22234
Alignment:
| Q |
88 |
gcaaatgggttaagttatgagaaagaagggttctgtgcaaatg |
130 |
Q |
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| T |
22276 |
gcaaatgggttaagttgtgagaaagaagggttctgtgaaaatg |
22234 |
T |
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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 85442 - 85497
Alignment:
| Q |
291 |
ctttgaactctattaattcatcactagtttggattttatagatcatttagcacacat |
347 |
Q |
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||||||| ||||| ||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
85442 |
ctttgaaatctatgaattcatcacttgtt-ggattttggagatcatttagcacacat |
85497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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