View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_4 (Length: 519)
Name: NF13946_low_4
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Original strand, 39115535 - 39116023
Alignment:
| Q |
11 |
gatgaaatcgatgaccaaacccaagccggagnnnnnnnnnatatatattttgaattaaccctaaattaaacccatcgaaccaaattcaaattggtttggt |
110 |
Q |
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| T |
39115535 |
gatgaaatcgatgaccaaacccaagcccgagattttttt-atatatattttgaattaaccctaaattaaacccatcgaaccaaattcaaattggtttggt |
39115633 |
T |
|
| Q |
111 |
ttagacaattggcttataatttaaactagtgaacttgcgaacccaacctatttaaagaaaaattattatttattatttttgtgaatatggttttagactt |
210 |
Q |
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| T |
39115634 |
ttagacaattggcttataatttaaactagtgaacttgcgaacccaacctatttaaagaaaaattattatttattatttttgtgaatatggttttagactt |
39115733 |
T |
|
| Q |
211 |
ttatctgttcaatcttgaagtgtttcaatttagttcaagtgcggcagattgaaattatatagttcagtttaaattatgttaaaatatttgtttttcttaa |
310 |
Q |
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| T |
39115734 |
ttatctgttcaatcttgaagtgtttcaatttagttcaagtgcggcagattgaaattatatagttcagtttaaattatgttaaaatatttgtttttcttaa |
39115833 |
T |
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| Q |
311 |
agaatatattagaatatttgttgaattacacgtaatttcaaatttacgtttcgaaattttaaaaatgttgtatataacgtgtgacataatgtactgtggt |
410 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39115834 |
agaatatattagaatatttgttgaattagacgtaatttcaaatttacgtttcgaaattttaaaaatgttgtatataacgtgtgacataatgtactgtagt |
39115933 |
T |
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| Q |
411 |
acacnnnnnnnnaggggttattgtagtagacaattgtaatggccaattgaccattgcacagcaagtatcaaactaagatcgaatgccataat |
502 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115934 |
acacttttttttaggggttattgtagtagac--ttgtaatggccaattgaccattgcacagcaagtatcaaactaagatcgaatgccataat |
39116023 |
T |
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