View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_40 (Length: 220)
Name: NF13946_low_40
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 28217096 - 28216904
Alignment:
| Q |
19 |
tctaacattacttaaatgatacaatttaaaaatatatatattaatattgttgagaaacatggagaaaaataaaatgatagaaagattggttggttggtcc |
118 |
Q |
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| T |
28217096 |
tctaacattacttaaatgatacaatttaaaaaaattattattaatattgttgagaaacatggagaaaaataaaatgatagaaaggttggttggttggtcc |
28216997 |
T |
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| Q |
119 |
tggaatagattgtatgaagaagttgatacaatgagtagaatggaataagattggctaattttgaaatttgat---gactttgtaagtttgttc |
208 |
Q |
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| T |
28216996 |
tggaatagattgtatgaagaagttgatacaatgagtagaatggaataagattggctaattttgaaatttgatgaggactttgtaagtttgttc |
28216904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 28227945 - 28227756
Alignment:
| Q |
19 |
tctaacattacttaaatgatacaatttaaaaatatatatattaatattgttgagaaacatggagaaaaataaaatgatagaaagattggttggttggtcc |
118 |
Q |
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|||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28227945 |
tctaacattatttaaatgatacaatttaaaaaaattattattaatattgttgagaaacatggagaaaaataaaatgatagaaaggttggttggttggtcc |
28227846 |
T |
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| Q |
119 |
tggaatagattgtatgaagaagttgatacaatgagtagaatggaataagattggctaattttgaaatttgatgactttgtaagtttgttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28227845 |
tggaatagattgtatgaagaagttgatacaatgagtagaatgaaataagattggctaattttgaaatttgatgactttgtatgtttgttc |
28227756 |
T |
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