View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13946_low_6 (Length: 497)
Name: NF13946_low_6
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 129 - 493
Target Start/End: Complemental strand, 51715153 - 51714790
Alignment:
| Q |
129 |
gaactgagtaccccgaaaattgcctataatcaataaatgctcattcatctaacttggtgtgaagctacaaaactgacatagctgcattctttgcattgca |
228 |
Q |
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| T |
51715153 |
gaactgagtaccccgaaaattgcctataatcaataaatgctcattcatctaacttggtgtgaagctacaaaactgacatagctgcattctttgcattgca |
51715054 |
T |
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| Q |
229 |
cccaaataatttccagtatttagtttggtttcggcacataaccatcgacagcaaaattttagagtggtgtctgtaatagttaaatgaactatatcaagtt |
328 |
Q |
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| T |
51715053 |
cccaaataatttccagtatttagtttggtttcggcacataaccatcgacagcaaaatttt-gagtggtgtctgtaatagttaaatgaactatatcaagtt |
51714955 |
T |
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| Q |
329 |
aacccttagctatcacttggcagctcagatgtgatctgcatatataactatcaaaattagtctatggtcatttcaccaaagattgttgctactccattca |
428 |
Q |
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| T |
51714954 |
cagccttagctatcacttggcagctcagatgtgatctgcatatataactatcaaaattagtctatggtcatttcaccaaagattgttgctgctccattca |
51714855 |
T |
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| Q |
429 |
atactaactagccactctgatgagtcatacccacatgatgcaccactctcatctaatagaataat |
493 |
Q |
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| T |
51714854 |
atactaactagccactctgatgagtcatacccacatgatgcaccactgtcatctaatagaataat |
51714790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 51715311 - 51715217
Alignment:
| Q |
17 |
atagacatgttcctgtaaaaccattttcatacaagtagtttattatacatcnnnnnnntccaagtagtttattggtaagcaattgtatttgtagt |
111 |
Q |
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| T |
51715311 |
atagacatgttcctgtaaaaccattttcatacaattagtttattatacatcaaaaaaatccaagtagtttattggtaagcaattgtatttgtagt |
51715217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 55010158 - 55010013
Alignment:
| Q |
144 |
aaaattgcctataatcaataaatgctcattcatctaacttggtgtgaagctacaaaactgacatagctgcattctttgcattgcacccaaataatttcca |
243 |
Q |
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|||| |||||| ||||||||| ||||||| |||||||| || |||||||||||||||||| ||||| |||||||||||||| ||| |||| || ||||| |
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| T |
55010158 |
aaaaatgcctaagatcaataaaagctcatttatctaactcggcgtgaagctacaaaactgagatagccgcattctttgcattacacacaaaaaacttcca |
55010059 |
T |
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| Q |
244 |
g---tatttagtttggtttcggcacataaccatcgacagcaaaatt |
286 |
Q |
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| T |
55010058 |
ggaaaaactagtgtggtttcggcacgtaaccatcaacagcaaaatt |
55010013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 51233182 - 51233301
Alignment:
| Q |
167 |
gctcattcatctaacttggtgtgaagctacaaaactgacatagctgcattctttgcattgcacccaaataatttccag---tatttagtttggtttcggc |
263 |
Q |
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||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | |||||| || |||||| || |||| |||||||||| |
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| T |
51233182 |
gctcatttatctaacttggtgcgaagctacaaaactgagatggctgcattctttgcattacccccaaaaaacttccagcaataactagtgtggtttcggc |
51233281 |
T |
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| Q |
264 |
acataaccatcgacagcaaa |
283 |
Q |
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|| |||||||| |||||||| |
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| T |
51233282 |
acgtaaccatcaacagcaaa |
51233301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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