View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13946_low_8 (Length: 491)
Name: NF13946_low_8
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13946_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 4274912 - 4274441
Alignment:
| Q |
18 |
ggatccaacatgacaatgcacgtggtcctatgaaaggaggaattcgttatcaccccgaggttttctttctttcttacaatgatttaatattcatgaattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274912 |
ggatccaacatgacaatgcacgtggtcctatgaaaggaggaattcgttatcaccccgaggttttctttctttcttacaatgatttaatattcatgaattt |
4274813 |
T |
|
| Q |
118 |
tgtcaatgtttatgattgttattgtaattgatgtgttgtagtcacgattgtgattgcgattatgtcttaccgttattattgtggtgattcatacaatcct |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274812 |
tgtcaatgtttatgattgttattgtgattgatgtattgtagtcgcgattgtgattgcgattatgtcttaccgttattattgtggtgattcatacaatcct |
4274713 |
T |
|
| Q |
218 |
acatattgtatgaaatcacaaattaatgtgattgttgctaatgcattttcaattgcaatcatgatttgtaatgatctctaag-ttttgatattgtggcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4274712 |
acatattgtatgaaatcacaaattaatgtgattgttgctaatgcattttcaattacaatcatgatttgtaatgatctctaagtttttgatattgtggcaa |
4274613 |
T |
|
| Q |
317 |
tccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaagtttggtgctcctaagta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274612 |
tccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaagtttggtgctcctaagta |
4274513 |
T |
|
| Q |
417 |
cgatatgaggttgagtcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttc |
488 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274512 |
cgatatgaggttgaatcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttc |
4274441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 38823263 - 38823327
Alignment:
| Q |
17 |
aggatccaacatgacaatgcacgtggtcctatgaaaggaggaattcgttatcaccccgaggtttt |
81 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
38823263 |
aggatccaacatgacaatgctcgtggtccaatgaaaggaggaattcgttatcaccctgaggtttt |
38823327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 41209721 - 41209785
Alignment:
| Q |
17 |
aggatccaacatgacaatgcacgtggtcctatgaaaggaggaattcgttatcaccccgaggtttt |
81 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
41209721 |
aggatccaacatgacaatgctcgtggtccaatgaaaggaggaattcgttatcaccctgaggtttt |
41209785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University