View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13946_low_9 (Length: 482)

Name: NF13946_low_9
Description: NF13946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13946_low_9
NF13946_low_9
[»] scaffold0296 (1 HSPs)
scaffold0296 (18-473)||(631-1094)
[»] chr7 (10 HSPs)
chr7 (18-473)||(44584450-44584913)
chr7 (86-138)||(9141411-9141463)
chr7 (86-138)||(11642544-11642596)
chr7 (86-134)||(16375862-16375910)
chr7 (83-141)||(48844493-48844551)
chr7 (104-141)||(45823704-45823741)
chr7 (59-147)||(26002280-26002368)
chr7 (107-147)||(39274087-39274127)
chr7 (86-130)||(45286377-45286421)
chr7 (86-134)||(45418696-45418744)
[»] chr3 (7 HSPs)
chr3 (86-137)||(14604255-14604306)
chr3 (32-141)||(47399301-47399410)
chr3 (86-138)||(2702077-2702129)
chr3 (61-141)||(12813320-12813400)
chr3 (61-141)||(29679409-29679489)
chr3 (61-141)||(29692929-29693009)
chr3 (61-141)||(29693343-29693423)
[»] chr4 (4 HSPs)
chr4 (18-75)||(7118930-7118987)
chr4 (86-138)||(29968185-29968237)
chr4 (52-141)||(4882209-4882298)
chr4 (93-138)||(18000694-18000739)
[»] chr1 (4 HSPs)
chr1 (57-138)||(5429202-5429283)
chr1 (86-138)||(11930947-11930999)
chr1 (90-138)||(23481076-23481124)
chr1 (86-138)||(36216942-36216994)
[»] scaffold0013 (2 HSPs)
scaffold0013 (86-138)||(104593-104645)
scaffold0013 (88-138)||(127244-127294)
[»] chr8 (6 HSPs)
chr8 (86-138)||(604286-604338)
chr8 (86-131)||(1199464-1199509)
chr8 (86-138)||(44434248-44434300)
chr8 (86-137)||(44430684-44430735)
chr8 (83-135)||(4969616-4969668)
chr8 (83-135)||(9885783-9885835)
[»] chr6 (2 HSPs)
chr6 (86-138)||(8560340-8560392)
chr6 (86-138)||(17905898-17905950)
[»] scaffold0059 (1 HSPs)
scaffold0059 (88-138)||(71420-71470)
[»] scaffold1155 (1 HSPs)
scaffold1155 (86-138)||(903-955)
[»] scaffold0345 (1 HSPs)
scaffold0345 (86-138)||(9262-9314)
[»] scaffold0105 (1 HSPs)
scaffold0105 (86-138)||(29666-29718)
[»] chr5 (3 HSPs)
chr5 (86-138)||(19123117-19123169)
chr5 (86-136)||(14164629-14164679)
chr5 (86-138)||(7782144-7782196)
[»] chr2 (1 HSPs)
chr2 (93-138)||(20640222-20640267)


Alignment Details
Target: scaffold0296 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 1094 - 631
Alignment:
Q  18 aggtttatatacctagattatcattgacacctgatgatattagaattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1094 aggtttatatacctagattatcattgacacctgatgatattagaattcctttcaaattccaaaggaggcaatttcctttgactgtttcatttgcaatgac 995  T
Q  118 tattaataaaagtcaagggcaatcgttaaagcatgtagggttgtatctttctcgttcagttttctcacatggtcgtctatatgtggcgttttcaagggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  994 tattaataaaagtcaagggcaatcgttaaagcatgtagggttgtatctttctcgttcagttttctcacatggtcaactataagtggcgttttcaagggtt 895  T
Q  218 acctcgagaaagggtttgaaaatattggtaattgatgatgaaagtcaagatacaaatat--------gactgcaaatgttgtttataaagaaatatttca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           || |||||||||||||||||||||||||||    
T  894 acctcgagaaagggtttgaaaatattggtaattgatgatgaaagtcaagatacaaatattgtaaatgttttgtaaatgttgtttataaagaaatatttca 795  T
Q  310 aaaattatattaattggtaagcttagannnnnnnnnnnnnnnaattttgttaattgtactacatattttgtaaatatattaccattgtcatctactctaa 409  Q
    ||| |||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  794 aaagttatattaattggtaagcttagattttattttttttttaattttgttaattgtactacatattttgtaaatatattaccattgtcatctactctaa 695  T
Q  410 agttactaattgatgataatgtttaaatgtttgctgtaagtatggatctaattgggtttctctg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  694 agttactaattgatgataatgtttaaatgtttgctgtaagtatggatctaattgggtttctctg 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 44584450 - 44584913
Alignment:
Q  18 aggtttatatacctagattatcattgacacctgatgatattagaattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44584450 aggtttatatacctagattatcattgacacctgatgatattagaattcctttcaaattccaaaggaggcaatttcctttgactgtttcatttgcaatgac 44584549  T
Q  118 tattaataaaagtcaagggcaatcgttaaagcatgtagggttgtatctttctcgttcagttttctcacatggtcgtctatatgtggcgttttcaagggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  44584550 tattaataaaagtcaagggcaatcgttaaagcatgtagggttgtatctttctcgttcagttttctcacatggtcaactataagtggcgttttcaagggtt 44584649  T
Q  218 acctcgagaaagggtttgaaaatattggtaattgatgatgaaagtcaagatacaaatat--------gactgcaaatgttgtttataaagaaatatttca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           || |||||||||||||||||||||||||||    
T  44584650 acctcgagaaagggtttgaaaatattggtaattgatgatgaaagtcaagatacaaatattgtaaatgttttgtaaatgttgtttataaagaaatatttca 44584749  T
Q  310 aaaattatattaattggtaagcttagannnnnnnnnnnnnnnaattttgttaattgtactacatattttgtaaatatattaccattgtcatctactctaa 409  Q
    ||| |||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44584750 aaagttatattaattggtaagcttagattttattttttttttaattttgttaattgtactacatattttgtaaatatattaccattgtcatctactctaa 44584849  T
Q  410 agttactaattgatgataatgtttaaatgtttgctgtaagtatggatctaattgggtttctctg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44584850 agttactaattgatgataatgtttaaatgtttgctgtaagtatggatctaattgggtttctctg 44584913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 9141463 - 9141411
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||  ||||| ||||||||||||||    
T  9141463 caatttcctttgactgtatcatttgcaatgataattaacaaaagtcaagggca 9141411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 11642596 - 11642544
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| |||| |||||||||    
T  11642596 caatttcctttgactgtatcatttgcaatgacaattaacaaaattcaagggca 11642544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 16375910 - 16375862
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaag 134  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||    
T  16375910 caatttcctttgactttatcatttgcaatgacaattaaaaaaagtcaag 16375862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 48844551 - 48844493
Alignment:
Q  83 aggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    ||||||||||||||| | || |||||||| |||||||| || |||||||||| ||||||    
T  48844551 aggcaatttcctttggcaatctcatttgcgatgactatcaacaaaagtcaagagcaatc 48844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 45823704 - 45823741
Alignment:
Q  104 tcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    ||||||||||||||||| || |||||||||||||||||    
T  45823704 tcatttgcaatgactatcaacaaaagtcaagggcaatc 45823741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 26002280 - 26002368
Alignment:
Q  59 agaattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatcgttaaa 147  Q
    |||||||| ||||| |||||| | ||||| |||||| | ||| |||  ||  ||||||| ||||||||||||||||| ||||| |||||    
T  26002280 agaattccattcaagttccaacgtaggcagtttcctattactgtttgtttcacaatgaccattaataaaagtcaaggtcaatcattaaa 26002368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 39274127 - 39274087
Alignment:
Q  107 tttgcaatgactattaataaaagtcaagggcaatcgttaaa 147  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  39274127 tttgcaatgaccattaataaaagccaagggcaatcattaaa 39274087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 45286377 - 45286421
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagt 130  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||    
T  45286377 caatttcctttgactgtatcatttgcaatgacaattaacaaaagt 45286421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 45418744 - 45418696
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaag 134  Q
    |||||| |||||||| | |||||||||||||| ||||| ||||||||||    
T  45418744 caatttgctttgactgtatcatttgcaatgacaattaacaaaagtcaag 45418696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 14604255 - 14604306
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggc 137  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  14604255 caatttcctttgactgtatcatttgcaatgacaattaataaaagtcaagggc 14604306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 47399410 - 47399301
Alignment:
Q  32 agattatcattgacacctgatgatattagaattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtc 131  Q
    |||||||| |||| ||||  ||||| ||||||||||||||| || ||| | | |||||||||  | || ||||| |||||| ||||||| || |||||||    
T  47399410 agattatctttgataccttctgatactagaattcctttcaagtttcaacgaaagcaatttccacttaccatttcttttgcagtgactataaacaaaagtc 47399311  T
Q  132 aagggcaatc 141  Q
    |||| |||||    
T  47399310 aaggccaatc 47399301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 2702077 - 2702129
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||  ||||||||||||||    
T  2702077 caatttcctttgactgtatcatttgcaatgacaattatcaaaagtcaagggca 2702129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 12813400 - 12813320
Alignment:
Q  61 aattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    |||||||||||||||  |||| ||| |||||||| |  || | ||||||||||| ||||| || |||||||||| ||||||    
T  12813400 aattcctttcaaattttaaagaaggtaatttcctctttctgtgtcatttgcaattactatcaacaaaagtcaagagcaatc 12813320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 29679489 - 29679409
Alignment:
Q  61 aattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    |||||||||||| || ||| | ||  |||||||||||  | | ||||||||||||||||||||||| || ||| |||||||    
T  29679489 aattcctttcaagtttcaacgaagaaaatttcctttggttgtctcatttgcaatgactattaataagagccaatggcaatc 29679409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 29693009 - 29692929
Alignment:
Q  61 aattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    |||||||||||| || ||| | || ||||||||||||  | | ||||||||||||||| ||||||| || ||||| |||||    
T  29693009 aattcctttcaagtttcaacgaagacaatttcctttggttgtctcatttgcaatgactgttaataagagccaaggacaatc 29692929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 29693423 - 29693343
Alignment:
Q  61 aattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    |||||||||||| || ||| | || ||||||||||||  | | ||||||||||||||| ||||||| || ||||| |||||    
T  29693423 aattcctttcaagtttcaacgaagacaatttcctttggttgtctcatttgcaatgactgttaataagagccaaggacaatc 29693343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7118987 - 7118930
Alignment:
Q  18 aggtttatatacctagattatcattgacacctgatgatattagaattcctttcaaatt 75  Q
    |||| ||||||| ||||||||||||||  ||| |||||||||||||||||||||||||    
T  7118987 aggtctatatacttagattatcattgagtccttatgatattagaattcctttcaaatt 7118930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 29968185 - 29968237
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    |||||| |||||||| | |||||||||||||| ||||| ||||||||||||||    
T  29968185 caattttctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 29968237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 4882298 - 4882209
Alignment:
Q  52 tgatattagaattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggcaatc 141  Q
    ||||| ||||||||||||||| || ||| | | |||||||||  | ||  |||| |||||||||||||| || ||||||||||| |||||    
T  4882298 tgatactagaattcctttcaagtttcaacgaaagcaatttccacttaccgtttcttttgcaatgactataaacaaaagtcaaggtcaatc 4882209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 18000739 - 18000694
Alignment:
Q  93 ctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    |||||||| | |||||||||||||| ||||| ||||||||||||||    
T  18000739 ctttgactgtatcatttgcaatgacaattaagaaaagtcaagggca 18000694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 5429202 - 5429283
Alignment:
Q  57 ttagaattcctttcaaattccaaaggaggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    |||||||||| || || || ||| | || ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  5429202 ttagaattccctttaagtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 5429283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 11930947 - 11930999
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||| | | |||||||||||||  ||||| ||||||||||||||    
T  11930947 caatttcctttgattgtatcatttgcaatgataattaacaaaagtcaagggca 11930999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 23481124 - 23481076
Alignment:
Q  90 ttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||| | | |||||||||||||| ||||| ||||||||||||||    
T  23481124 ttcctttgattgtatcatttgcaatgacaattaacaaaagtcaagggca 23481076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 36216994 - 36216942
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    |||||||||||| |||| |  |||||||||||||| |||||||| ||||||||    
T  36216994 caatttcctttgtctatatgctttgcaatgactataaataaaagccaagggca 36216942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 104593 - 104645
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  104593 caatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 104645  T

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Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 127244 - 127294
Alignment:
Q  88 atttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  127244 atttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 127294  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 604338 - 604286
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  604338 caatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 604286  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 1199464 - 1199509
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtc 131  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||    
T  1199464 caatttcctttgactatatcatttgcaatgacaattaacaaaagtc 1199509  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 44434248 - 44434300
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||  ||||| ||||||||||||||    
T  44434248 caatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggca 44434300  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 44430684 - 44430735
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggc 137  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  44430684 caatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggc 44430735  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 4969616 - 4969668
Alignment:
Q  83 aggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagg 135  Q
    ||||||||||| ||| || |||| ||||||||||||||||| |||||| ||||    
T  4969616 aggcaatttccattggctgtttcttttgcaatgactattaacaaaagttaagg 4969668  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 9885835 - 9885783
Alignment:
Q  83 aggcaatttcctttgactatttcatttgcaatgactattaataaaagtcaagg 135  Q
    ||||||||||| ||| || |||| |||||| |||||||||| |||||||||||    
T  9885835 aggcaatttccattggctgtttcttttgcagtgactattaacaaaagtcaagg 9885783  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 8560392 - 8560340
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  8560392 caatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 8560340  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 17905950 - 17905898
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  17905950 caatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 17905898  T

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Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 71470 - 71420
Alignment:
Q  88 atttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  71470 atttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggca 71420  T

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Target: scaffold1155 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 955 - 903
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||| ||||    
T  955 caatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggca 903  T

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Target: scaffold0345 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 9262 - 9314
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||| ||||    
T  9262 caatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggca 9314  T

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Target: scaffold0105 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 29718 - 29666
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||| ||||    
T  29718 caatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggca 29666  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 19123117 - 19123169
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||||| | ||||||||||||||  |||| ||||||||||||||    
T  19123117 caatttcctttgactgtatcatttgcaatgacagttaacaaaagtcaagggca 19123169  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 14164679 - 14164629
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaaggg 136  Q
    ||||||||||||| | | |||||||||||||| ||||| ||||||||||||    
T  14164679 caatttcctttgaatgtatcatttgcaatgacaattaacaaaagtcaaggg 14164629  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 7782144 - 7782196
Alignment:
Q  86 caatttcctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    ||||||||||||| | | |||||||||||||  ||||| ||||||||||||||    
T  7782144 caatttcctttgattgtatcatttgcaatgataattaacaaaagtcaagggca 7782196  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 20640267 - 20640222
Alignment:
Q  93 ctttgactatttcatttgcaatgactattaataaaagtcaagggca 138  Q
    |||||||| | |||||||||||||| ||||| ||||||||||||||    
T  20640267 ctttgactgtatcatttgcaatgacaattaagaaaagtcaagggca 20640222  T

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