View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_high_17 (Length: 217)
Name: NF13947_high_17
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38448762 - 38448962
Alignment:
| Q |
1 |
aactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtacattccaaagtcatttcgaagcttctgatttaa |
100 |
Q |
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| T |
38448762 |
aactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtaaattccaaagtcatttccaagcttctgatttaa |
38448861 |
T |
|
| Q |
101 |
gaatgttacta---ttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
197 |
Q |
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| T |
38448862 |
gaatgttactatatttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
38448961 |
T |
|
| Q |
198 |
g |
198 |
Q |
| |
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| |
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|
| T |
38448962 |
g |
38448962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 38440418 - 38440467
Alignment:
| Q |
148 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
197 |
Q |
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| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtatct |
38440467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 38448087 - 38448130
Alignment:
| Q |
66 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
109 |
Q |
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| T |
38448087 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38448130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 38550182 - 38550139
Alignment:
| Q |
66 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
109 |
Q |
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||||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
38550182 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38550139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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