View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_high_2 (Length: 490)
Name: NF13947_high_2
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 30791167 - 30790690
Alignment:
| Q |
1 |
acggcagattcaatattttcatttttcaagacattcttaaagtggttctgtgaagttagaaattagggtttctcgctcaaccaaattataacacgctcta |
100 |
Q |
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| T |
30791167 |
acggcagattcaatattttcatttttcaagacattcttaaagtggttctgtgaagttagaaattagagtttctcgctcaacgaaattataacacgctcga |
30791068 |
T |
|
| Q |
101 |
cctaactcgactcttacaaaaccgacttgtattatgaggactgacttcacttataaactgattatttccatgttttatctcgtctaatggggaactctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30791067 |
cctaactcgactcttacaaaaccgacttgtattatgaggactgattccacttataaactgattatttccatgttttatctcgtctaatgtggaactctta |
30790968 |
T |
|
| Q |
201 |
acacaccccttcacacccaaattgagtatctggaatgtgactcaagtgacccgataacgttaatttgatagcaaatggcccaatgaatattgaataggct |
300 |
Q |
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| T |
30790967 |
acacaccccttcacacccaaattgagtatctggaatgtgactcaagtgacccaataacggtaatttgatagcaaatggtccaataaatattgaataggct |
30790868 |
T |
|
| Q |
301 |
atgatatcatcttaaattttagatttggcctaactcaacctttatcggtttagaaggtgagaattgtcttgccttactaataaatacattttcagaccaa |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30790867 |
atgatatcatcttagattttagatttggcctaactcaacctttatcggtttagaaggtgagaattgtcttgccttactaataaatacattttcagaccaa |
30790768 |
T |
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| Q |
401 |
tgtgggacacttaaccattatcattttcatacggctgatccgatcaaattatagcagtttcaatttgaagaataattt |
478 |
Q |
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| T |
30790767 |
tgtgggacacataaccattatcattttcatacggctgatccgatcaaattatagcagtttcaatttgaagaataattt |
30790690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 14596162 - 14596210
Alignment:
| Q |
294 |
ataggctatgatatcatcttaaattttagatttggcctaactcaacctt |
342 |
Q |
| |
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||||||| | ||||||||||||| ||| |||| |||||||||||||||| |
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| T |
14596162 |
ataggctctaatatcatcttaaaattttgattgggcctaactcaacctt |
14596210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 16015690 - 16015738
Alignment:
| Q |
294 |
ataggctatgatatcatcttaaattttagatttggcctaactcaacctt |
342 |
Q |
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||||||| | ||||||||||||| ||| |||| |||||||||||||||| |
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| T |
16015690 |
ataggctctaatatcatcttaaaattttgattgggcctaactcaacctt |
16015738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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