View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_high_3 (Length: 463)
Name: NF13947_high_3
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 47035079 - 47035508
Alignment:
| Q |
18 |
tttatggttttgttatttatttgttgaatgtgcgtactattctactgttctttataacaacaatattagttaaaacgtgttagctaaagaaattgggaca |
117 |
Q |
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| T |
47035079 |
tttattgttttgttatttatttgttgaatgtgcgtactattctactgttctttataacaacaat--tagttaaaacgtgttagctaaagaaattgggaca |
47035176 |
T |
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| Q |
118 |
tttcgaacaaccctcgtacattatatcaaccaggctctgacttatatattcnnnnnnngaaacagaacgatgaaaacagtccatctagtgcgtagttgta |
217 |
Q |
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| T |
47035177 |
tttcgaacaaccctcgtacattatatcaaccaggctctgacttatatattctttttttgaaacagaacgatgaaaacagtccatctagtgcgtagttgta |
47035276 |
T |
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| Q |
218 |
catgaaattgttgcagctgatttataaaatcttattaaacaaatttttaaattgatttcttc-aannnnnnnnaatctatactatgttttaacagttttt |
316 |
Q |
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| T |
47035277 |
catgaaattgttgcagctgatttataaaatcttattaaacaaatttttaaattgatttcttcaaaaaaaaaaaaatctatactatgttttaacaattttt |
47035376 |
T |
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| Q |
317 |
taaattgacatctacattattttccatcccaactcaacatttgttaataaatttattgtttggttttttaggtttactactatgaaggactggtgatagc |
416 |
Q |
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| T |
47035377 |
taaattgacttctacattattttccatcccaactcaacatttgttaatatatttattgtttggttttttaggtttactactataaaggactggtgatagc |
47035476 |
T |
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| Q |
417 |
aaacaagcatggaacaaggataaagtagaaga |
448 |
Q |
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| T |
47035477 |
aaacaagcatggaacaaggataaagtagaaga |
47035508 |
T |
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